Pairwise Alignments

Query, 335 a.a., vitamin B12 ABC transporter permease BtuC from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., iron-compound ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  155 bits (392), Expect = 2e-42
 Identities = 101/305 (33%), Positives = 164/305 (53%), Gaps = 27/305 (8%)

Query: 51  SSLEQQLVWELRLPRLLAAAVIGASLAVAGATLQVLLGNVLAEPGVVGVSGGASVAMVIL 110
           +++  ++V ELRLPR+L A V GA L++AG+ LQ +  N LA+P + G+S GAS   V++
Sbjct: 73  AAMTDRIVMELRLPRILLAFVAGAGLSLAGSVLQTVTRNPLADPYLFGISSGASFGAVVM 132

Query: 111 LLFFPS----------LNSPVAFMAAAVLGALLFTL-----------LLVVMARK---LR 146
           L  F             NS +   A  + G   F+L           +L+V+A     L 
Sbjct: 133 LTLFSGSGFFANAGVIANSGIFSGAEILAGLQWFSLPFGAFIGASLSVLIVLALSGLGLN 192

Query: 147 LTTARLLLVGVALGILSGAVVTWAFYFSDDLGLRQLMYWLMGSVAGVSWYQHLLSLVAVP 206
               R+LL GVA   + GA+ +   YF+       +++W +GS A  SW   +L  + V 
Sbjct: 193 SQVERMLLSGVATSFMFGALTSLLLYFASPQATASVLFWSLGSFAKASWSLLILPTIVVL 252

Query: 207 VVIWLVL-QGGVLDKLMLGEGHAKQLGIDIHRVRWRLILAIALLVGASVALGGVIGFVGL 265
           V  +++L     +  L  G+  A  LG+++ ++R  ++L  +L+    VA  G IGFVGL
Sbjct: 253 VSFFIILGWKRQIMALQAGDETAHTLGVNVPKLRLNMLLLCSLITAILVATCGGIGFVGL 312

Query: 266 VVPHLLRLTLGSENRLLLPLSALCGALLLVSADLIARLALGSGELPLGVVTTTLGAPIFI 325
           ++PH +RL       +L  L+AL G L +V  D++AR  LG+ ELP+G++T ++G+  F+
Sbjct: 313 MIPHTVRLLFPGRQPIL--LTALVGGLFMVWIDVLARCLLGNQELPVGIITASIGSFFFL 370

Query: 326 WMLVR 330
            +L R
Sbjct: 371 LILRR 375