Pairwise Alignments

Query, 335 a.a., vitamin B12 ABC transporter permease BtuC from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., transport system permease protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  211 bits (538), Expect = 2e-59
 Identities = 121/286 (42%), Positives = 182/286 (63%), Gaps = 11/286 (3%)

Query: 55  QQLVWELRLPRLLAAAVIGASLAVAGATLQVLLGNVLAEPGVVGVSGGASVAMVILLL-- 112
           Q +++++RLPRL    ++GA+LAVAGA +Q L  N LA+PG+VGVS GA +  ++ ++  
Sbjct: 69  QVILFDIRLPRLALGLLVGAALAVAGAVMQGLFRNPLADPGIVGVSAGAGLGAILAIVLG 128

Query: 113 ------FFPSLNSPVAFMAAAVLGALLFTLLLVVMARKLRLTTARLLLVGVALGILSGAV 166
                 F  +L + +  +AA   G     LL  V  R+ R + A +LL G+AL  L+GA+
Sbjct: 129 AALPAFFIDALGNYLIPLAAFAGGWGSTILLYKVSTRRGRTSVATMLLAGIALAALTGAL 188

Query: 167 VTWAFYFSDDLGLRQLMYWLMGSVAGVSWYQHLLS--LVAVPVVIWLVLQGGVLDKLMLG 224
                Y +DD  LR L +W +GS+AG +W + L++  L+AV  +   +L  G L+ + LG
Sbjct: 189 SGILVYIADDRQLRDLTFWGLGSLAGATWTKVLIAGPLIAVAFLSAPLLARG-LNGMALG 247

Query: 225 EGHAKQLGIDIHRVRWRLILAIALLVGASVALGGVIGFVGLVVPHLLRLTLGSENRLLLP 284
           E  A  +G+ + R++   IL +A   GA+VA+ G IGFVG+VVPHLLR+ +G ++R LLP
Sbjct: 248 EAAAAHMGVALERLKTGAILIVASATGAAVAVSGGIGFVGIVVPHLLRIAVGPDHRTLLP 307

Query: 285 LSALCGALLLVSADLIARLALGSGELPLGVVTTTLGAPIFIWMLVR 330
            +AL GA LLV AD I+R  +   ELP+G+VT  LGAP+F+W+L+R
Sbjct: 308 NAALLGASLLVLADCISRTIIAPAELPIGIVTAVLGAPVFLWILLR 353