Pairwise Alignments

Query, 471 a.a., L-cystine transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., sodium:dicarboxylate symporter (RefSeq) from Shewanella loihica PV-4

 Score =  173 bits (439), Expect = 9e-48
 Identities = 128/420 (30%), Positives = 213/420 (50%), Gaps = 31/420 (7%)

Query: 46  QVLFGLVLGSAFGLALQVVLGEGHPAIQETLSWVAIVGNGYVGLLKMVIMPLVLVSMISA 105
           Q+L G++LG   GL L      G  A+      +  +G  +V  +KM+I+PLV  S+I  
Sbjct: 25  QILIGMLLGICAGLGL------GEQAVL-----LKPIGTLFVNTIKMLIVPLVFCSLIVG 73

Query: 106 VVRLDKNGSLGKISSLTIGILLVTTAISALIGILITQAFGLTAEGLVEGARETARIAALE 165
           V  +     +G+I   +    L TT+I+  +G+ +         G +        + + E
Sbjct: 74  VTSMQDTAKMGRIGFKSFAFYLGTTSIAITLGLAV---------GHIMQPGAGLAMTSAE 124

Query: 166 SRASTVADLTIPQILLSFIPTNPFADLTGARSTSIIAVVIFGVLTGIAARKVIADKQELE 225
           S  +     +I + L++ +PTNP A L    S  I+ V++F V  GIA   +I D  +  
Sbjct: 125 SHNAVKEVPSIMETLINIVPTNPIAALA---SGQILQVIVFAVALGIAL-VLIGDHGK-- 178

Query: 226 TPIRTFVEAAQAIVMRLVKMIMALTPYGIAALMAKVVATSSATDILNLLGFIVASYVAIA 285
             I+ F   A+A+  +L  M+M L PYG+  LMA V        ++ L+  I+A Y+  A
Sbjct: 179 PAIKVFESLAEAMY-KLTDMVMKLAPYGVFGLMAWVAGEYGMDMLMPLIKVILAVYIGCA 237

Query: 286 LMFV-VHGLLVAMVG-VNPTRYFKNIWPVLTFAFTSRSSAATIPLNVEAQITKLNVPPAI 343
           L  +  + L++  V  +NP ++FK I   L  A+T+ SSA T+P +++     L +   I
Sbjct: 238 LHIIGFYSLVLTFVAKLNPMQFFKGISNALAVAYTTSSSAGTLPASMKCASESLGINKKI 297

Query: 344 ANLSASFGATIGQNGCAGIYPAMLAVMVAPTVGINPLDIHFIVSLIAMITISSFGIAGVG 403
           ++     G TI  +G A +Y  + A+ VA   GI+   + +I ++I   T++S G AGV 
Sbjct: 298 SSFVLPLGTTINMDGTA-LYQGVTALFVAQAFGIDLTWVDYI-TIILTATLASIGTAGVP 355

Query: 404 GGATFAALIVLPAMGLPVTIAALLISIEPLIDMARTALNVSGSMTAGTVTSRLLKETNEE 463
           G       +VL  +GLP+   A++  I+ ++DMART +NVSG + A TV ++   E + E
Sbjct: 356 GAGLVMLTLVLTTVGLPLEGVAIIAGIDRILDMARTVVNVSGDLVATTVIAKSEDELDLE 415



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 40  AATLSRQVLFGLVLGSAFGLALQVVLGEGHPAIQ 73
           AA  S Q+L  +V   A G+AL ++   G PAI+
Sbjct: 149 AALASGQILQVIVFAVALGIALVLIGDHGKPAIK 182