Pairwise Alignments

Query, 471 a.a., L-cystine transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., sodium:dicarboxylate symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  180 bits (456), Expect = 1e-49
 Identities = 130/442 (29%), Positives = 222/442 (50%), Gaps = 33/442 (7%)

Query: 36  LQKKAATLSRQVLFGLVLGSAFGLALQVVLGEGHPAIQETLS--WVAIVGNGYVGLLKMV 93
           LQ K   L+ ++L G+  G  FGL L+ +  +    I++ ++  ++ ++G  ++  LKM+
Sbjct: 5   LQNKLG-LTSKILIGMATGIIFGLILRNLFPDSI-FIKDYITDGFLHVIGTIFISSLKML 62

Query: 94  IMPLVLVSMISAVVRLDKNGSLGKISSLTIGILLVTTAISALIGILITQAFGLTAEGLVE 153
           ++PLV +S++     L +   LG++   T+   L TT ++ ++ +    A  +   G   
Sbjct: 63  VVPLVFISLVCGTCSLSEPSKLGRLGGKTLAFYLFTTVLALVLAVF---AAVIVHPGDAT 119

Query: 154 GARETARIAALESRASTVADLTIPQILLSFIPTNPFADLTGARSTSIIAVVIFGVLTGIA 213
            A E     A E+ +         Q+++  +PTNP   ++     +++ ++IF V+ G A
Sbjct: 120 LANEKLNYVAKEAPS-------FAQVIIDMMPTNPVQAMSEG---NMLQIIIFAVIFGFA 169

Query: 214 ARKVIADKQELETPIRTFVEAAQAIVMRLVKMIMALTPYGIAALMAKVVATSSATDILNL 273
               IA   E    I    +    ++MR+V ++M L PYG+ ALMAK+  T      L  
Sbjct: 170 ----IAHLGERGNRIAQLFDDLNNVIMRVVTLVMQLAPYGVFALMAKLALTLG----LET 221

Query: 274 LGFIVASYVAIALMFVVHG------LLVAMVGVNPTRYFKNIWPVLTFAFTSRSSAATIP 327
            G +V  +  +  + ++H       LL A  G+NP  + + +  V  FAF++ SS AT+P
Sbjct: 222 FGSVVKYFFLVLTLLLIHNFVTYSILLKAFSGLNPLIFIRKMRDVQLFAFSTASSNATLP 281

Query: 328 LNVEAQITKLNVPPAIANLSASFGATIGQNGCAGIYPAMLAVMVAPTVGINPLDIHFIVS 387
           + +EA   +L V   IA+ +   GATI  +G A I   +  V +A   GI  L +    +
Sbjct: 282 ITIEASEHRLGVDNKIASFTLPLGATINMDGTA-IMQGVATVFIAQVFGIE-LSLTDYAA 339

Query: 388 LIAMITISSFGIAGVGGGATFAALIVLPAMGLPVTIAALLISIEPLIDMARTALNVSGSM 447
           +I   T++S G AGV G       +VL  +GLPV   AL+I ++ L+DM RTA+NV+G  
Sbjct: 340 VIVTATLASIGTAGVPGVGLIMLAMVLNQVGLPVEGIALIIGVDRLLDMVRTAVNVTGDC 399

Query: 448 TAGTVTSRLLKETNEEPEPQTQ 469
            A  + ++   E NE     TQ
Sbjct: 400 VATVIIAKSEGEFNETVFNNTQ 421