Pairwise Alignments

Query, 471 a.a., L-cystine transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 424 a.a., proton/glutamate symporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  170 bits (431), Expect = 7e-47
 Identities = 128/422 (30%), Positives = 208/422 (49%), Gaps = 35/422 (8%)

Query: 46  QVLFGLVLGSAFGLALQVVLGEGHPAIQETLSWVAIVGNGYVGLLKMVIMPLVLVSMISA 105
           Q+  G+VLG   G+ L            E  S++  +G  +V  +KM+I+PLV  S+I  
Sbjct: 8   QIFVGMVLGILVGVTLG-----------EQASYLKPIGTLFVNTIKMLIVPLVFCSLIVG 56

Query: 106 VVRLDKNGSLGKISSLTIGILLVTTAISALIGILITQAFGLTAEGLVEGARETARIAALE 165
           V  ++    +G+I   +    L TTAI+  +G+++               +  A +  L+
Sbjct: 57  VTSMEDTAKMGRIGFKSFSFYLCTTAIAISLGLVVGYVI-----------QPGAGVPLLQ 105

Query: 166 SRASTVADL--TIPQILLSFIPTNPFADLTGARSTSIIAVVIFGVLTGIAARKVIADKQE 223
             A   A    ++ Q L+  +PTNP A L    S  I+ V++F V  GIA   +I D  +
Sbjct: 106 HEAVNTAKEVPSVMQTLIDIVPTNPVAALA---SGQILQVIVFAVALGIAL-VLIGDHGK 161

Query: 224 LETPIRTFVEAAQAIVMRLVKMIMALTPYGIAALMAKVVATSSATDILNLLGFIVASYVA 283
               I+ F   A+A+  +L  M+M L PYG+  LMA V        +  L+  I+A Y+ 
Sbjct: 162 --PAIKVFESLAEAMY-KLTDMVMKLAPYGVFGLMAWVAGEYGIDMLWPLIKVIIAVYIG 218

Query: 284 --IALMFVVHGLLVAMVGVNPTRYFKNIWPVLTFAFTSRSSAATIPLNVEAQITKLNVPP 341
             I ++     +L     +NP  +FK I   +  AFT+ SSA T+P +++     L V  
Sbjct: 219 CIIHVLGFYSIVLRLFAKLNPLHFFKGISNAMAVAFTTSSSAGTLPASMKCASEYLGVNK 278

Query: 342 AIANLSASFGATIGQNGCAGIYPAMLAVMVAPTVGINPLDIHFIVSLIAMITISSFGIAG 401
            I++     G TI  +G A +Y  + A+ VA   GI+   + ++ ++I   T++S G AG
Sbjct: 279 KISSFVLPLGTTINMDGTA-LYQGVTALFVAQAFGIDLTWVDYL-TIILTATLASIGTAG 336

Query: 402 VGGGATFAALIVLPAMGLPVTIAALLISIEPLIDMARTALNVSGSMTAGTVTSRLLKETN 461
           V G       +VL  +GLP+   AL+  I+ ++DMART +NVSG + A TV ++   E +
Sbjct: 337 VPGAGLVMLTLVLSTVGLPLEGVALIAGIDRILDMARTVVNVSGDLVATTVIAKSENELD 396

Query: 462 EE 463
            E
Sbjct: 397 VE 398



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 40  AATLSRQVLFGLVLGSAFGLALQVVLGEGHPAIQ 73
           AA  S Q+L  +V   A G+AL ++   G PAI+
Sbjct: 132 AALASGQILQVIVFAVALGIALVLIGDHGKPAIK 165