Pairwise Alignments

Query, 224 a.a., LrgB family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 244 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  121 bits (303), Expect = 1e-32
 Identities = 62/212 (29%), Positives = 116/212 (54%)

Query: 3   LIITLGVFFVARWVAQKCTTPLANPLLISIGILIPLLTYLKVPFETYYADNQWLSYLLQP 62
           L++TL  +F A+ + Q+       P++++  ++  L+  L +P  TY+    WL  +L P
Sbjct: 26  LLLTLFCYFAAKILYQRHRVWWLAPIVLAPVVITLLVFNLDIPLPTYFEYTHWLMAMLAP 85

Query: 63  AVVALAYPLYEQLPQIRANWRIIALACGVGSVMSMITASLIAVSMGADIELIAALMGKSV 122
           A +A A P+Y +   IR     IA     G ++ M+++ L+   +   +EL  +L+ +SV
Sbjct: 86  ATIAFALPIYRERKLIRQYPLTIAFGVIAGLLLGMVSSWLLVKFVPLPVELSKSLLVRSV 145

Query: 123 TTPIAMEVARQLGGEPAIAAILVLLVGLFGAILAYPIYKLLNITHPIAKGLTMGTVSHAL 182
           +TP AME     GG P + A++VL+ G+ G ++  P++KL++I   + KG+ +G  +H  
Sbjct: 146 STPFAMEATGAFGGVPELTAMMVLITGIIGMLVCEPLFKLMHIRTSLGKGVALGASAHGA 205

Query: 183 GTATCAEKDPRDAAFSSLALVVCGVITSVLAP 214
           G A  +E   ++   +SL ++  G+   + AP
Sbjct: 206 GAAKASELGQQEGVIASLTMIFIGIAMVLGAP 237