Pairwise Alignments

Query, 295 a.a., cytidine deaminase from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., cytidine deaminase (RefSeq) from Shewanella loihica PV-4

 Score =  253 bits (647), Expect = 3e-72
 Identities = 129/284 (45%), Positives = 182/284 (64%), Gaps = 1/284 (0%)

Query: 1   MRNRIEQALQQMPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIA 60
           M++R    + Q+P   A  L  L L +DF     A+Q   L   + +   +L +ALLPIA
Sbjct: 1   MQDRFVHCIAQLPQPLADQLVPL-LNQDFVGHMDAQQVADLAAATQMSQDELLLALLPIA 59

Query: 61  AAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAEQCAISHAWMKGEKGVA 120
           AA +  PISEFYVGAI +G SG +Y+GAN+E  G  L  +VHAEQ AISHAW+ GE G+ 
Sbjct: 60  AALAKPPISEFYVGAIAKGASGDIYMGANLELDGEALFHSVHAEQSAISHAWLSGETGIE 119

Query: 121 DITINFSPCGHCRQFMNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLMSPV 180
           DI +N SPCGHCRQFMNEL    +++I LP++A + L  YLP +FGPADL I + L+S  
Sbjct: 120 DIIVNASPCGHCRQFMNELVEGQAIRIHLPEQATQPLSHYLPYAFGPADLNIKTPLLSKQ 179

Query: 181 NHGKTSDDDEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPP 240
            H  T +  + +I +AL  +++S++PY+++++ V L+ R GA + G YAENAAFNPS+ P
Sbjct: 180 QHEFTLESADPMIIEALDHLSLSYAPYSESYAAVVLETRDGATFCGRYAENAAFNPSMLP 239

Query: 241 LQVALAQAMMMGESFEDIEAAALVESATGKISHLADTQATLEVI 284
           +Q+AL+        F +I  A L+ES+ GKIS +  T   L  +
Sbjct: 240 MQMALSAMARHNRDFSEINRAVLIESSQGKISLVGATMDALHAV 283