Pairwise Alignments

Query, 372 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 485 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  115 bits (287), Expect = 3e-30
 Identities = 64/171 (37%), Positives = 103/171 (60%), Gaps = 2/171 (1%)

Query: 195 LYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVNDH 254
           L +  R+LE ++ TD LTG  NR+          + A+ +Q     ++IDID FK VND 
Sbjct: 313 LGRYQRKLEIMASTDKLTGAANRQVFEEYFHQALDKAKLSQTSISILLIDIDHFKKVNDS 372

Query: 255 HGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAIQQ 314
           +GH VGD VL T+ N+LR   +  D++CR GG+EFLV+ PE + +    +AE+   +I Q
Sbjct: 373 YGHSVGDLVLKTVTNLLRSQLKPQDILCRWGGEEFLVLLPEMDLSRAAELAERFRDSISQ 432

Query: 315 QVISLENNIRWQGSVSMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRV 365
           + + + N +    +VS+GVA +   ++   +L++ AD A+Y AK +G+N+V
Sbjct: 433 RELKV-NGVHIAITVSIGVAEY-QKLEPAEDLIKRADLALYQAKEAGRNQV 481