Pairwise Alignments

Query, 372 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  121 bits (303), Expect = 3e-32
 Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 11/204 (5%)

Query: 170 VSERNRELVKLNQSLEEKVIERTQQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWN 229
           + ERNREL  + Q+       RT +L + N +LE LS TD LT + NRR   + L   W+
Sbjct: 144 LEERNRELESIIQA-------RTYELAEANNRLEKLSNTDGLTNIGNRRLFDQMLQKEWS 196

Query: 230 LAQDNQQPFVCVMIDIDGFKAVNDHHGHDVGDKVLTTIANML-RDHFRSDDLVCRLGGDE 288
             Q N  P   +M+DID FK  NDH+GH  GD  L  +AN L +   R+ +LV R GG+E
Sbjct: 197 RGQRNNTPLSLIMLDIDHFKLFNDHYGHLAGDDCLKMLANGLSQSGRRAGELVARYGGEE 256

Query: 289 FLVICPETNTAGGVYIAEQVCRAIQQQVISLENNIRWQGSVSMGVAAFASNMKDHH-ELL 347
           F+++ P T+    +  A+ V + IQ   I          +VS+GVA    + K +  EL+
Sbjct: 257 FVILLPNTDLQTALDTAKHVHQLIQSLAIPHIKTNLGIVTVSVGVACLLPSDKHNALELV 316

Query: 348 RAADQAVYLAKNSGKNRVCAFGAP 371
             AD A+YLAK++G+N  C   AP
Sbjct: 317 HQADTALYLAKSAGRN--CIRSAP 338