Pairwise Alignments

Query, 372 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  128 bits (321), Expect = 5e-34
 Identities = 83/235 (35%), Positives = 127/235 (54%), Gaps = 20/235 (8%)

Query: 145 YAKEEREKNAATEPLLNALNALFDQVSERNRELVKLNQSLEEKVIERT-------QQLYQ 197
           Y  E + K    +  L     +     E  +   + N+ LE+KV ERT       ++L++
Sbjct: 386 YNDERKAKQRIQQEALKQAQKIRSAREEALKVEAETNERLEQKVQERTLELEITLRELHE 445

Query: 198 VNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVNDHHGH 257
           VN++L   S  DSLTG+ NR    ++L+    +++  + P   +M+DID FK++ND  GH
Sbjct: 446 VNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSINDQFGH 505

Query: 258 DVGDKVLTTIANMLRDHF-RSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAIQQQV 316
             GD+ L  IA  L+ H  R  DLV R GG+EF +I P T   G + +AE    +I+  V
Sbjct: 506 LAGDQALKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAE----SIRDTV 561

Query: 317 ISLENNIRWQG-----SVSMGVAAFASNMKDHH-ELLRAADQAVYLAKNSGKNRV 365
             +   + W+G     +VS+GV+A     + H  ELL  AD+A+Y AKNSG+N+V
Sbjct: 562 SCI--GLTWEGKPIPLTVSIGVSADVIMNEQHSTELLEQADKALYQAKNSGRNQV 614