Pairwise Alignments

Query, 372 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  116 bits (291), Expect = 7e-31
 Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 7/216 (3%)

Query: 156 TEPLLNALNALFDQVSERNRELVKLNQSLEEKVIERTQQLYQVNRQLEALS---MTDSLT 212
           + P +N LN L D V +  + L+  NQ++E+ +    Q++  +  ++E LS   MTD LT
Sbjct: 103 SSPDVNTLNQLVDGVIDEMQNLLVNNQTMEQSLNAMGQEVQNLKTEMENLSLAAMTDQLT 162

Query: 213 GLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVNDHHGHDVGDKVLTTIANMLR 272
            L NRR     +  H + A++       ++IDID FK  ND +GH VGDKVL  +A  L+
Sbjct: 163 SLHNRRAYEIAIQDHIHRAEEQHTRCSLLLIDIDRFKVFNDTYGHQVGDKVLAYVALALK 222

Query: 273 DHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAIQQQVISLENNIRWQ---GSV 329
              R DD V R GG+EF+V+ P T+    + +AE +   I ++ +++  + +      +V
Sbjct: 223 QCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETLRGRISERRLAIGKDKKLSLGAITV 282

Query: 330 SMGVAAFASNMKDHHELLRAADQAVYLAKNSGKNRV 365
           S+G+A+      D   L   AD+A+Y AK+ G+N V
Sbjct: 283 SIGLASLQKG-DDAETLFSRADKALYEAKSDGRNCV 317