Pairwise Alignments

Query, 372 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., diguanylate cyclase with GAF sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  110 bits (275), Expect = 5e-29
 Identities = 72/204 (35%), Positives = 113/204 (55%), Gaps = 8/204 (3%)

Query: 166 LFDQVSER-NRELVKLNQSLEEKVIERTQQLYQVNRQLEALSMTDSLTGLPNRRKAMRQL 224
           ++D V ++ N+  +   Q+L  +VI    +L +V  QL   SMTD+LTG+ NRR    + 
Sbjct: 126 VYDHVPKQLNQRQISSLQALSRQVIA-ILELKKVGEQLHNTSMTDALTGVNNRRAFDLKF 184

Query: 225 VLHWNLAQDNQQPFVCVMIDIDGFKAVNDHHGHDVGDKVLTTIANMLRDHFRSDDLVCRL 284
              +   Q   Q FV  +IDID FK+ ND +GH  GD+ L+ +A + + H R+ D   R 
Sbjct: 185 EAEFARWQRTGQSFVLALIDIDHFKSFNDSYGHAAGDEALSQVAALFQRHSRNYDFFARY 244

Query: 285 GGDEFLVICPETNTAGGVYIAEQVCRAIQQQVISLENNIRWQGSVSMGVAAFASNMKDHH 344
           GG+EF++I P T+TA      E++     + V++    +  Q +VS+G+A+ A    D  
Sbjct: 245 GGEEFVLILPGTDTASANKTLEKL-----RLVVANHEWLLRQLTVSIGLAS-ADLFDDKK 298

Query: 345 ELLRAADQAVYLAKNSGKNRVCAF 368
           +LL  ADQ +Y AK  G+N+   F
Sbjct: 299 QLLEVADQMLYKAKTQGRNQTSVF 322