Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 585 a.a., Excinuclease ABC subunit C from Pseudomonas fluorescens FW300-N2E2

 Score =  592 bits (1526), Expect = e-173
 Identities = 318/591 (53%), Positives = 411/591 (69%), Gaps = 14/591 (2%)

Query: 23  MYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETEALILEH 82
           M+++EA ++YVGKAK+LKKRL SYFRK   + KT ALV  IA+I+ T+T  ETEAL+LE 
Sbjct: 1   MFDSEARLLYVGKAKNLKKRLASYFRKTGLAPKTSALVGRIAQIETTITANETEALLLEQ 60

Query: 83  NYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRGAKKRRGEYFGPYPDSGAVRETL 142
             IK++ P YN+LLRDDKSYPY+FLS    PRLS HRGAKK +G YFGPYP +GA+RE+L
Sbjct: 61  TLIKEWRPPYNILLRDDKSYPYVFLSDGAFPRLSIHRGAKKAKGRYFGPYPSAGAIRESL 120

Query: 143 HLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEIVHYLRLFLQGK 202
            L+QK F VRQCED+ Y NRTRPCL YQI RC  PCV G +  Q Y E V +  +FL+G+
Sbjct: 121 SLLQKTFFVRQCEDSYYKNRTRPCLQYQIKRCKAPCV-GFVEPQVYAEDVRHSVMFLEGR 179

Query: 203 DNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLEDLDVLGFAQEN 262
            N +   L   ME A+  L FE AA+ RDQI  +RRVQ+QQ +   S  D+DV+      
Sbjct: 180 SNALTDELSAAMEDAAVNLEFERAAELRDQIGLLRRVQDQQSMEGGS-GDVDVIAAFINP 238

Query: 263 GIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSEARSIPARIILNR 322
           G AC+H++ +R G+VLGS++ FP++  +    EV  +FL QYY+S  E R +PA +I+N 
Sbjct: 239 GGACVHLISVRGGRVLGSKNFFPQVGIEEDVSEVMAAFLGQYYISSPE-RDLPAELIVN- 296

Query: 323 GLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAITTKMNHKMTISQRF 382
            + E+  AL  AI +L GR++T      GTR R+ +LA TNA  A+  ++ ++  ++ RF
Sbjct: 297 VVHEDFPALIEAIDKLRGRELTISHRVRGTRARWQQLAVTNAEQALGARLANRQHVAARF 356

Query: 383 KALQEELGMD-AITRMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNITGITGGDDY 441
            AL + L +D    R+EC+DISH+ GE+T+ASCVVF  EGP+K +YRRYNI G+T GDDY
Sbjct: 357 DALADVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRYNIEGVTPGDDY 416

Query: 442 AAMAQVLERRYSKQLD-SSKIPDIIFIDGGKGQLNRAYEIISSCWQDWPKYPKII--GIA 498
           AAM Q L RR+ K  D   K+PDI+ +DGGKGQL+ A ++++         P +I  G+A
Sbjct: 417 AAMHQALMRRFGKLKDGEGKLPDILLVDGGKGQLSMARDVLNEL-----MVPDLILLGVA 471

Query: 499 KGVTRKPGLETLITID-GDEFHLPSDAPALHLIQHIRDESHNHAIAGHRAQRGKTRRTST 557
           KG TRK G ETL   D   EF L  D+PALHLIQ IRDE+H  AI GHRA+RGKTRRTST
Sbjct: 472 KGATRKAGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAITGHRARRGKTRRTST 531

Query: 558 LEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAENIYQAL 608
           LEG+ GVGP RR+ LLK+ GG+QEL RAS+EEIAK PGIS  LAE+IY  L
Sbjct: 532 LEGVAGVGPTRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLAESIYANL 582