Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 607 a.a., excinuclease ABC, C subunit from Pseudomonas stutzeri RCH2

 Score =  630 bits (1625), Expect = 0.0
 Identities = 333/613 (54%), Positives = 435/613 (70%), Gaps = 14/613 (2%)

Query: 1   MSTQFDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALV 60
           M+  FDS+ FL   + +PGVYRM++A+A+++YVGKAK+LKKRL SYFRK   + KT ALV
Sbjct: 1   MTETFDSSAFLAACSGRPGVYRMFDAQAKLLYVGKAKNLKKRLASYFRKTGQAPKTAALV 60

Query: 61  SNIAKIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRG 120
           + IA+++ T+T  ETEAL+LE   IKQ+ P YN+LLRDDKSYPY+FLSA + PRLS HRG
Sbjct: 61  AKIAQVETTITANETEALLLEQTLIKQWRPPYNILLRDDKSYPYVFLSAGEFPRLSIHRG 120

Query: 121 AKKRRGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVK 180
           AKK  G YFGPYP +GA+RE+L L+QK F VRQCED+ Y NRTRPCL YQI RC  PCV 
Sbjct: 121 AKKEPGRYFGPYPSAGAIRESLSLLQKAFFVRQCEDSYYRNRTRPCLQYQIKRCKAPCV- 179

Query: 181 GLISDQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQ 240
            L+    Y E V +  +FL+G+ N +   L   ME+A+  L FE AA+ RDQI  +RRVQ
Sbjct: 180 NLVEPAEYAEDVRHSVMFLEGRSNALAEELSRNMEKAAMSLDFERAAEIRDQIGILRRVQ 239

Query: 241 EQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESF 300
           +QQ + +    D+D++      G AC+H++ +R G+VLGS++ FP++  + S  EV ++F
Sbjct: 240 DQQSM-EGGTGDVDIVAAVVSPGGACVHLITVRGGRVLGSKNFFPQVAIEESVSEVLQAF 298

Query: 301 LSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLA 360
           L QYYL  +E R +PA +I+N  + E+   L  AISEL G ++T      GTR R+ +LA
Sbjct: 299 LEQYYLGAAE-RDLPAELIVN-AVHEDFATLIDAISELRGVELTITHRVRGTRARWQQLA 356

Query: 361 NTNALTAITTKMNHKMTISQRFKALQEELGMD-AITRMECFDISHTMGESTMASCVVFNQ 419
            TNA  A+  ++ ++  +S RF+AL E L +D    R+ECFDISH+ GE+T+ASCVVF  
Sbjct: 357 LTNAEQAMGARLANRQHLSARFEALAEALELDEPPQRLECFDISHSSGEATVASCVVFGP 416

Query: 420 EGPLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQLD-SSKIPDIIFIDGGKGQLNRAY 478
           EGPLK +YRRYNI G+T GDDYAAM Q L RR+ K  +   K+PDI+ +DGGKGQLN A 
Sbjct: 417 EGPLKSDYRRYNIEGVTAGDDYAAMHQALSRRFRKAAEGEGKLPDILLVDGGKGQLNMAR 476

Query: 479 EIISSCWQDWPKYPKII--GIAKGVTRKPGLETLITID-GDEFHLPSDAPALHLIQHIRD 535
           E++          P++I  G+AKGVTRKPGLETL   D   EF LP+D+PALHLIQ +RD
Sbjct: 477 EVLEEL-----AVPELILLGVAKGVTRKPGLETLYLNDAAHEFTLPADSPALHLIQQVRD 531

Query: 536 ESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPG 595
           E+H  AI GHRA+RGK RRTSTLE + G+GPKRR+ LL + GG+QEL RAS++EIAK PG
Sbjct: 532 EAHRFAITGHRARRGKARRTSTLEEVPGIGPKRRRELLTHFGGLQELCRASLDEIAKAPG 591

Query: 596 ISHALAENIYQAL 608
           IS  LAE+IY AL
Sbjct: 592 ISKKLAESIYAAL 604