Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 607 a.a., Excinuclease ABC subunit C from Pseudomonas syringae pv. syringae B728a

 Score =  617 bits (1591), Expect = 0.0
 Identities = 320/613 (52%), Positives = 432/613 (70%), Gaps = 14/613 (2%)

Query: 1   MSTQFDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALV 60
           M+  FD   FL T + +PGVYRM++AEA ++YVGKAK+LKKRL SYFRK   + KT ALV
Sbjct: 1   MTQTFDPGAFLATCSGRPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALV 60

Query: 61  SNIAKIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRG 120
           S IA+I+ T+T  ETEAL+LE   IK++ P YN+LLRDDKSYPY+FLS +  PRLS HRG
Sbjct: 61  SRIAQIETTITGNETEALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDNAFPRLSIHRG 120

Query: 121 AKKRRGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVK 180
            KK +G YFGPYP +GA+RE+L L+QK F VRQCED+ + NRTRPCL YQI RC GPCV 
Sbjct: 121 TKKAKGRYFGPYPSAGAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCV- 179

Query: 181 GLISDQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQ 240
           GL+  + Y E V +  +FL+G+ N +   L   ME+A+  L FE AA+ RDQ+  +RRVQ
Sbjct: 180 GLVEPEVYAEDVRHSVMFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQ 239

Query: 241 EQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESF 300
           +QQ + D    D+DV+      G AC+H++ +R G+VLGS++ FP++  +    EV  +F
Sbjct: 240 DQQSM-DGGTGDVDVVAAFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAF 298

Query: 301 LSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLA 360
           L+QY+L   + R +P  +I+N  + ++  A   A+ EL G ++       GTR R+ ++A
Sbjct: 299 LAQYFLGGID-RELPGEVIVN-VINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMA 356

Query: 361 NTNALTAITTKMNHKMTISQRFKALQEELGM-DAITRMECFDISHTMGESTMASCVVFNQ 419
            TNA  A+T ++ ++  ++ RF+AL + LG+ D   R+EC+DISH+ GE+T+ASCVVF  
Sbjct: 357 VTNAEQALTARLANRQHVASRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGP 416

Query: 420 EGPLKQEYRRYNITGITGGDDYAAMAQVLERRYSK-QLDSSKIPDIIFIDGGKGQLNRAY 478
           EGP+K +YRR+NI G+T GDDYAAM Q L RRYS+ +    K+PD++ +DGGKGQ++ A 
Sbjct: 417 EGPIKSDYRRFNIEGVTAGDDYAAMHQALTRRYSRIKAGEGKLPDVLLVDGGKGQMSMAR 476

Query: 479 EIISSCWQDWPKYPKII--GIAKGVTRKPGLETLITID-GDEFHLPSDAPALHLIQHIRD 535
           ++++       + P++I  G+AKG TRK G ETL   D   EF LP D+PALHLIQ IRD
Sbjct: 477 DVLNEL-----QVPELILLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRD 531

Query: 536 ESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPG 595
           E+H  AI GHRA+RGKTRRTSTLEG+ GVGP RR+ LLK+ GG+QEL RAS++EIAK PG
Sbjct: 532 EAHRFAITGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPG 591

Query: 596 ISHALAENIYQAL 608
           IS  LAE+IY  L
Sbjct: 592 ISKKLAESIYANL 604