Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., excinuclease ABC subunit UvrC from Synechocystis sp000284455 PCC 6803

 Score =  336 bits (861), Expect = 2e-96
 Identities = 213/613 (34%), Positives = 343/613 (55%), Gaps = 33/613 (5%)

Query: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKAL-VSNIAKIDVT 69
           L+ +  +PGVY M + + E++Y+GKAK L+ R+ SYFR +       AL V  +A+I+  
Sbjct: 21  LQEIPQEPGVYFMGDRQGEILYIGKAKKLRTRVRSYFRDSQPHTARIALMVQQVAEIEFI 80

Query: 70  VTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLS-AHKHPRL--SSHRGAKKRRG 126
           VT TE EAL LE N IKQ+ P +NVLL+DDK YPY+ ++ +  +PR+  +  R   + + 
Sbjct: 81  VTDTEAEALALEANLIKQHQPHFNVLLKDDKKYPYVCITWSETYPRIFITRKRRLNQAKD 140

Query: 127 EYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQ 186
            Y+GPY DS ++R+TL LIQ+IFP+RQ    ++ +R  PCL Y IGRC G C + LI+ +
Sbjct: 141 RYYGPYVDSFSLRQTLRLIQRIFPLRQRRQPLFKHR--PCLNYDIGRCPGVCQE-LITPE 197

Query: 187 GYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVS 246
            Y++ +  + +  QG+  ++  +L ++ME+A+ +L+FE AA  RDQI ++ ++   Q VS
Sbjct: 198 DYRQTLQKVAMVFQGRTQELHQLLTQQMEKAAADLKFEQAALIRDQINSLGKLNADQKVS 257

Query: 247 --DDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPK-IPSDTSQVEVFESFLSQ 303
              D++   D +  A +  I+ I +  IR G+++G    F   + S+  + EV +  L Q
Sbjct: 258 LPQDTISR-DAIAVASDGQISAIQLFQIRAGRLVGRLGFFADGVESELEKGEVLQRVLEQ 316

Query: 304 YYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTN 363
           +Y    EA  IP+ +IL   L +  E L   ++   GRKVTF++    T+   L++   N
Sbjct: 317 HY-QQVEAVEIPSEVILPCALPDG-ELLNDWLTSQRGRKVTFNLPQRQTKAELLEMVERN 374

Query: 364 ALTAITTKMNHKMTISQRFKALQEELGMDAIT-RMECFDISHTMGESTMASCVVFNQEGP 422
           A   +              + L E L ++ +  R+E +DISH  G + +AS VVF    P
Sbjct: 375 AQYELERLQKQTAKNVTALEDLAEILNLETLPKRIEGYDISHIQGSNAVASQVVFIDGVP 434

Query: 423 LKQEYRRYNITG----ITGGDDYAAMAQVLERRYSKQLDSSKI----PDIIFIDGGKGQL 474
            +Q YR Y I      +   DD+A++A+V+ RR+   +   K     PD+I IDGGKGQL
Sbjct: 435 AQQYYRHYKIKNPSIKVGHSDDFASLAEVIIRRFQSSVKGKKNQQDWPDLIMIDGGKGQL 494

Query: 475 NRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDA--PALHLIQH 532
           +   +++     D      ++ +AK           I + G+   LP+ A  P + L++ 
Sbjct: 495 SAVVKVLKK--MDLLDKFTVVSLAKQREE-------IFLPGESQPLPTHAEQPGVQLLRR 545

Query: 533 IRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAK 592
           +RDE+H  A++ HR QR    R S L+ I G+G  R++ LL +   +  ++ ASV+++ +
Sbjct: 546 LRDEAHRFAVSFHRQQRLSKSRRSRLDEIPGLGFSRQKQLLAHFRSLDYIREASVKQLQE 605

Query: 593 VPGISHALAENIY 605
           VPGI   LA+ IY
Sbjct: 606 VPGIGPQLAQTIY 618