Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., excinuclease ABC subunit C (RefSeq) from Shewanella amazonensis SB2B

 Score =  728 bits (1879), Expect = 0.0
 Identities = 369/607 (60%), Positives = 460/607 (75%), Gaps = 5/607 (0%)

Query: 5   FDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIA 64
           FD   FLKTV++  GVYRMY+A AEVIYVGKAKDLKKRL+SYFR NL + KT+ALVSNIA
Sbjct: 2   FDHKAFLKTVSSASGVYRMYDAAAEVIYVGKAKDLKKRLSSYFRTNLPNIKTQALVSNIA 61

Query: 65  KIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRGAKKR 124
            IDVT+TH+ETEALILE++YIKQY+PKYNVLLRDDKSYPYI LS HKHPRL+ HRGA++ 
Sbjct: 62  NIDVTLTHSETEALILENDYIKQYMPKYNVLLRDDKSYPYILLSGHKHPRLAYHRGAQRE 121

Query: 125 RGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLIS 184
           +GEYFGPYP+ GAVRE+L+L+QK+FP+RQCED  Y  R+RPCL YQIGRC+ PCV G IS
Sbjct: 122 KGEYFGPYPNGGAVRESLNLMQKLFPIRQCEDAYYRARSRPCLQYQIGRCSAPCV-GKIS 180

Query: 185 DQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQF 244
           D+ Y E V    LFL+GKD QV++ LV KME A+  + +E AA+ RDQIQA+R+V EQQ 
Sbjct: 181 DEDYDEQVRLATLFLRGKDQQVIASLVGKMEAAALAMEYEAAARYRDQIQALRKVAEQQN 240

Query: 245 VSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQY 304
           VS     D+DV+G    +GIAC HIL IR+GK+ GSRS+FP +P  T   EV  +F+ Q+
Sbjct: 241 VSGQQ-GDMDVIGVNYASGIACFHILFIREGKIFGSRSYFPAVPDATELGEVLRAFMLQF 299

Query: 305 YLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNA 364
           YL +   RSIP  ++L     E+   L+ A+ +  G ++         R  +L+LANTNA
Sbjct: 300 YLGNEAHRSIPKEVLLGEEF-EDLHELEAAMQDSLGHRLEIKTKVRADRAAFLRLANTNA 358

Query: 365 LTAITTKMNHKMTISQRFKALQEELGMDA-ITRMECFDISHTMGESTMASCVVFNQEGPL 423
             A+ TK+ HK T+ QR + L+E LG+ A I RMECFDISHTMGEST+ASCVVFN+EGP 
Sbjct: 359 ANAVVTKLAHKSTVEQRMELLEEVLGLGAPIQRMECFDISHTMGESTVASCVVFNREGPN 418

Query: 424 KQEYRRYNITGITGGDDYAAMAQVLERRYSKQLDSSKIPDIIFIDGGKGQLNRAYEIISS 483
           K EYRRYNI+GITGGDDYAAMAQ L RR+ K   + K+PD++FIDGG GQL  A  I++ 
Sbjct: 419 KGEYRRYNISGITGGDDYAAMAQALSRRFDKIERTGKVPDVLFIDGGLGQLRAAMTIVND 478

Query: 484 CWQDWPKYPKIIGIAKGVTRKPGLETLITIDGD-EFHLPSDAPALHLIQHIRDESHNHAI 542
            + +  + P ++G+AKG +RKPGLETLI    + EF L SD PALHLIQHIRDESH  AI
Sbjct: 479 KFAELDRQPLLVGVAKGESRKPGLETLIFGGSEAEFSLESDNPALHLIQHIRDESHRFAI 538

Query: 543 AGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAE 602
            GHRA+R +TR TSTLE I G+GPKRR+ALL+YLGG+Q++K ASV E+AKVPGIS  +A+
Sbjct: 539 TGHRAKRQQTRNTSTLESIPGIGPKRRKALLQYLGGLQQVKNASVAELAKVPGISAEMAQ 598

Query: 603 NIYQALK 609
            I+ AL+
Sbjct: 599 TIHDALR 605