Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 704 a.a., excinuclease ABC subunit UvrC from Rhodopseudomonas palustris CGA009

 Score =  428 bits (1101), Expect = e-124
 Identities = 242/619 (39%), Positives = 354/619 (57%), Gaps = 31/619 (5%)

Query: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70
           ++     PGVYRM NAE +V+YVGKAK++KKRL SY R      +   +++   +++V  
Sbjct: 87  VRLAPTSPGVYRMLNAERDVLYVGKAKNVKKRLASYARPTGQVLRIARMIALTVEVEVIS 146

Query: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFL-SAHKHPRLSSHRGAKKRRGEYF 129
           T TETEAL+LE N IKQ  P++NV LRDDKS+PYI + S H  P++  HRGA+ R G YF
Sbjct: 147 TTTETEALLLEANLIKQLRPRFNVQLRDDKSFPYILITSDHWAPQILKHRGAQSRPGRYF 206

Query: 130 GPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQ 189
           GP+  +GAV  T+  +Q+ F VR C D+ + +RTRPCL+YQI RCAGPC  G +   GY 
Sbjct: 207 GPFASAGAVNRTITALQRAFLVRSCTDSFFESRTRPCLLYQIRRCAGPCT-GEVDFPGYS 265

Query: 190 EIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDS 249
           E+V     FL G+   V  +L  +ME+AS EL FE AA  RD++ A+  +Q QQ ++  +
Sbjct: 266 ELVREATDFLSGRSRAVKELLAAEMEKASGELEFETAALYRDRLAALSAIQSQQGINPRT 325

Query: 250 LEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHS 309
           +E+ DV    Q+ G +C+ +   R G+  G+R++FP+     +  EV  +F++Q+Y    
Sbjct: 326 VEEADVFAIHQDGGYSCVEVFFFRTGQNWGNRAYFPRAEKSFTPAEVLGAFVAQFYDDKP 385

Query: 310 EARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT 369
                P ++IL     EE E L  A+   AG KV   V   G +   +  A TNA  A+ 
Sbjct: 386 -----PPKLILLSHEIEEAELLADALCVKAGHKVEITVPKRGEKKELVAHAQTNAREALG 440

Query: 370 TKMNHKMTISQRFKALQEELGMDAI-TRMECFDISHTMGESTMASCVVFNQEGPLKQEYR 428
            K+    T ++  + L   LG+     R+E +D SH  G + + + +V   +G +K +YR
Sbjct: 441 RKLADTATQARLLENLATTLGLPKTPQRIEVYDNSHIQGTNAVGAMIVAGPDGFIKNQYR 500

Query: 429 RYNI--TGITGGDDYAAMAQVLERRYS-------------------KQLDSSKIPDIIFI 467
           ++NI   G+T GDDYA M +VL+RR+                    K  D  + PD++ I
Sbjct: 501 KFNIRSEGLTPGDDYAMMREVLQRRFKRLVTSQAEGDGEAAAKAKPKDDDVPQWPDLVII 560

Query: 468 DGGKGQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPAL 527
           DGG+GQLN A E +S           ++G+AKG  R  G ETL   D D   L    P L
Sbjct: 561 DGGRGQLNAAREALSGI--GLTDQVTLLGVAKGPDRDAGRETLFLPDRDAIKLEPRDPVL 618

Query: 528 HLIQHIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASV 587
           + IQ +RDE+H   I  HR  R K  R + L+ I G+GP R++ALL + G ++E++RAS+
Sbjct: 619 YFIQRLRDEAHRFVIGSHRTLRKKDIREAGLQEIPGIGPTRKRALLLHFGTLKEIERASI 678

Query: 588 EEIAKVPGISHALAENIYQ 606
            ++ KVPGIS   A+ I++
Sbjct: 679 ADLGKVPGISAESAKRIFE 697