Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., excinuclease ABC subunit C (RefSeq) from Shewanella loihica PV-4

 Score =  701 bits (1809), Expect = 0.0
 Identities = 352/611 (57%), Positives = 460/611 (75%), Gaps = 5/611 (0%)

Query: 1   MSTQFDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALV 60
           M+  F++  FLKTV++  GVYRMY+A+  VIYVGKAKDLKKRL+SYFR+NL + KT+ALV
Sbjct: 1   MTDSFNATQFLKTVSSSAGVYRMYDAQGVVIYVGKAKDLKKRLSSYFRRNLPNVKTQALV 60

Query: 61  SNIAKIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRG 120
           S+IA IDVT+T +ET+ALILE++YIKQY+P+YNVLLRDDKSYPYIFLS H+HPRL+ HRG
Sbjct: 61  SHIANIDVTLTPSETDALILENDYIKQYMPRYNVLLRDDKSYPYIFLSGHRHPRLAYHRG 120

Query: 121 AKKRRGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVK 180
            ++ +G YFGPYP+ GAVRE+LHL+QK+FP+RQC+D  Y  R+RPCL YQI RC+ PCV 
Sbjct: 121 PQREKGHYFGPYPNGGAVRESLHLMQKLFPIRQCDDLYYKARSRPCLQYQIARCSAPCV- 179

Query: 181 GLISDQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQ 240
           G ISD+ Y E V    LFL+GKD QV++ LV KMEQA+ +L +EDAA+ RDQI A+RRV 
Sbjct: 180 GKISDEDYAEQVKLASLFLRGKDQQVIATLVGKMEQAAMDLNYEDAARYRDQISALRRVA 239

Query: 241 EQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESF 300
           EQQ VS DS  D+DV+G    +GIAC H+L IR GK+ GSRS++P +P +T   EV  +F
Sbjct: 240 EQQEVSSDS-GDMDVIGAYYASGIACFHLLFIRNGKIFGSRSYYPSVPDETEVSEVLRAF 298

Query: 301 LSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLA 360
           + Q+YL+    R++P  I+++    E+   L+ AI++ + R++         R  +L++A
Sbjct: 299 MLQFYLNVDSQRTLPREIVVSHEF-EDIHELEEAIAQASNRRLLIKTKVRSERASFLRIA 357

Query: 361 NTNALTAITTKMNHKMTISQRFKALQEELGM-DAITRMECFDISHTMGESTMASCVVFNQ 419
           + NA  A+ T+++H+ T+ +RF  L+E L    AI RMECFDISHTMGEST+ASCVVFN+
Sbjct: 358 DANAKNAVETRLSHQNTVEERFLLLEEALEQSQAINRMECFDISHTMGESTVASCVVFNR 417

Query: 420 EGPLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQLDSSKIPDIIFIDGGKGQLNRAYE 479
           EGP K EYRRYNI+GIT GDDYAAM Q + RR+ K     KIPDI+FIDGG GQL  A +
Sbjct: 418 EGPSKGEYRRYNISGITPGDDYAAMKQAIGRRFDKIEADGKIPDILFIDGGMGQLRIAQK 477

Query: 480 IISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGD-EFHLPSDAPALHLIQHIRDESH 538
           +++  +      P +IG+AKG  RKPGLETLI  + +  F LP+D+ ALHLIQHIRDESH
Sbjct: 478 VVNEKFAHLDVAPTLIGVAKGEGRKPGLETLIYGENEVAFSLPADSGALHLIQHIRDESH 537

Query: 539 NHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISH 598
             AI GHR +R KTR TSTLE I GVGPKRR+ALL+YLGG+Q++K ASV +++KVPGIS 
Sbjct: 538 RFAITGHRNKRQKTRNTSTLESIPGVGPKRRKALLQYLGGLQQVKGASVAQLSKVPGISL 597

Query: 599 ALAENIYQALK 609
            +A+ I+ AL+
Sbjct: 598 EMAQTIHDALR 608