Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., excinuclease ABC, C subunit from Dechlorosoma suillum PS

 Score =  561 bits (1446), Expect = e-164
 Identities = 305/607 (50%), Positives = 403/607 (66%), Gaps = 13/607 (2%)

Query: 5   FDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIA 64
           FD+  FL T+T+ PGVYRM +AE +V+YVGKAK+LKKR++SYF++ + S +   +VS I 
Sbjct: 19  FDAKTFLATLTDLPGVYRMLDAEGKVLYVGKAKNLKKRVSSYFQRTVSSPRIALMVSRIC 78

Query: 65  KIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRGAKKR 124
            ID TVT +E EAL+LE+N IK   P +N+L RDDKSYPY+ L+  + PRL+  RGA  R
Sbjct: 79  GIDTTVTRSEAEALLLENNLIKSLDPPFNILFRDDKSYPYVQLTRDQFPRLAFFRGAPDR 138

Query: 125 RGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLIS 184
           + +Y+GP+P +  VR+++HL+QK F +R CED+V++NR+RPCL+YQI RC+GPCV GLIS
Sbjct: 139 KADYYGPFPAASVVRDSIHLLQKTFHLRTCEDSVFANRSRPCLLYQIHRCSGPCV-GLIS 197

Query: 185 DQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQF 244
            + Y + V    +FL+GK ++V+  L E MEQAS  L FE AA  RD+IQ +RR+QE+Q+
Sbjct: 198 AEDYAKDVQLAAMFLKGKQHEVIQRLTEAMEQASMALAFEQAAVLRDRIQGLRRIQEKQY 257

Query: 245 VSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQY 304
           V     ED DV+   QE+G+ C+++ MIR G+ LG +  FPK  +D    E   +FL Q+
Sbjct: 258 VDSGRDEDADVVVAVQESGMLCLNLAMIRGGQHLGDKPLFPKNAADCEPAEAIAAFLDQH 317

Query: 305 YLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNA 364
           Y  H     IPARI++N    +E  A  +A   LA R V            ++++A  NA
Sbjct: 318 YREH----PIPARILVNVPPADEEAAESLA--ALAERPVPIQEPRQTAHRMWVEMAVQNA 371

Query: 365 LTAITTKMNHKMTISQRFKALQEELGMDAI-TRMECFDISHTMGESTMASCVVFNQEGPL 423
             AI ++        QR +ALQE LG+  +  R+ECFDISHT GE+T+ASCVV+   G  
Sbjct: 372 RIAIASRRATLSMQGQRLEALQEALGLAELPQRIECFDISHTQGEATVASCVVYQGNGMR 431

Query: 424 KQEYRRYNITGITGGDDYAAMAQVLERRYSK-QLDSSKIPDIIFIDGGKGQLNRAYEIIS 482
           K EYRRYNI  I  GDDYAAM Q + RRY K  +     PD+I IDGGKGQ+  AY  + 
Sbjct: 432 KSEYRRYNIRDIQKGDDYAAMRQAVSRRYDKVAVGEGVCPDLILIDGGKGQVGVAYSALE 491

Query: 483 SCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDE-FHLPSDAPALHLIQHIRDESHNHA 541
                   +  +IG+AKGV RK GLE LI  DG +   LPS  PALHLIQ IRDESH  A
Sbjct: 492 ELGL---AHVPMIGVAKGVERKVGLEQLIFPDGRKPLQLPSTHPALHLIQEIRDESHRFA 548

Query: 542 IAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALA 601
           ++GHRAQRGK RRTSTLE I GVGP RR+AL+ + GG+Q +  ASV+ +A+VPGIS  LA
Sbjct: 549 VSGHRAQRGKARRTSTLEEIPGVGPTRRKALIAHFGGLQGIAGASVDRLAEVPGISRDLA 608

Query: 602 ENIYQAL 608
           E IY AL
Sbjct: 609 ERIYSAL 615