Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., excinuclease ABC subunit UvrC from Methanococcus maripaludis S2

 Score =  275 bits (703), Expect = 4e-78
 Identities = 187/553 (33%), Positives = 293/553 (52%), Gaps = 45/553 (8%)

Query: 11  LKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTV 70
           +  +   PG Y   N    VIYVGKAK+LKKR++SYF K     KT+ LV +I +++  V
Sbjct: 4   ISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIV 63

Query: 71  THTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRGAKKRRGEYFG 130
           T  E EALILE+  IK+Y PKYN+ L+D K+Y YI++S    PR+   R  K ++G+++G
Sbjct: 64  TDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYISEENFPRIGISRN-KSKKGKFYG 122

Query: 131 PYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQE 190
           P+  +      L +++K F +R C++       RPCL + I  C  PC  G I+ + Y  
Sbjct: 123 PFTSAKERDYVLDVLKKTFKIRSCKNM----HKRPCLRHHIKNCTAPC-SGDITSKDYLN 177

Query: 191 IVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSL 250
            +      L+G  + ++  L  +M + S+ L+FE+A   R++I AI R++ +Q V  D  
Sbjct: 178 QIKKAEHILKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRDVK 237

Query: 251 EDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSHSE 310
            + DV+   +++G   I +  + +G  L  R +F    ++      FE FL QYY     
Sbjct: 238 YNEDVISILEKSGKLHIMVFNVLKG-TLFDRKYFEFDYTE----NFFEEFLIQYY----S 288

Query: 311 ARSIPARIILN---RGLTEE-----TEALQIAISELAGRKVTFHVNPTGTRGRYLKLANT 362
              +P+ II++   + L E+     ++AL   +S+  G KV F +   G + + L LA  
Sbjct: 289 ENDVPSEIIISELPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAIK 348

Query: 363 NALTAITTKMNHKMTISQRFKALQEELGMDAITR-MECFDISHTMGESTMASCVVFNQEG 421
           N    +            + ++L+ +L +D     +ECFDISH  G ST+ S V F    
Sbjct: 349 NLEIYVNGN-------EIKVQSLKNKLMLDKSPNIIECFDISHLSGTSTVGSVVQFRNGK 401

Query: 422 PLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQLDSS-KIPDIIFIDGGKGQLNRAYEI 480
           P K+ YRR+ I  ++G DD+ ++++V+ RRYSK L+ + ++PD+I IDGGKGQL+ A+  
Sbjct: 402 PDKKNYRRFKIKTVSGIDDFKSISEVVFRRYSKLLEENLELPDLIIIDGGKGQLSSAFSE 461

Query: 481 ISSCWQDWPKYPKIIGIAKGVTR--KPGLETLITIDGDEFHLPSDAPALHLIQHIRDESH 538
           +       P    +I IAK       PG+E  + I  +E        A   IQ IRDE+H
Sbjct: 462 LRKLKLKIP----LISIAKREEEIYTPGIENPLPIKKNE-------KASLFIQEIRDEAH 510

Query: 539 NHAIAGHRAQRGK 551
             AI  +R  R K
Sbjct: 511 RFAINYNRLLRKK 523