Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., excinuclease ABC, C subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  213 bits (542), Expect = 2e-59
 Identities = 125/315 (39%), Positives = 184/315 (58%), Gaps = 8/315 (2%)

Query: 9   PFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRK-NLDSEKTKALVSNIAKID 67
           P L T+   PGVY   +    +IYVGKA+ L++R+ SYFR  +  + KT A++ +   ID
Sbjct: 18  PDLSTIPLTPGVYLYKDESGRIIYVGKARCLRRRVASYFRDVSALTPKTVAMLRHAVTID 77

Query: 68  VTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSA-HKHPRLSSHRGAKKRRG 126
              T TE EAL+LE + IK++ P+YN++LRDDK Y    + A H +PRL   R A++  G
Sbjct: 78  TLSTTTEKEALLLEASLIKKHRPRYNIVLRDDKQYVLFRIGAKHPYPRLEIVRKARRDDG 137

Query: 127 EYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQ 186
            YFGP+  + A RET   I + FP+R+C D  + NR R CL + +G+C GPCV  + S+ 
Sbjct: 138 RYFGPFTSASAARETWKTIHRAFPLRRCSDRAFGNRVRACLYHHMGQCLGPCVNEVPSET 197

Query: 187 GYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVS 246
            Y  ++  + L L G+  +++  L  +ME AS+ L FE AA  RD+I+A+ R  E+Q   
Sbjct: 198 -YAALLEQVSLLLSGRSGELVDALRTEMEAASQGLDFERAAVLRDRIRALERTVERQAAV 256

Query: 247 DDSLEDLDVLGFAQ-ENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYY 305
                DLDV+G  + ENG+A + +L +RQG +L  RS F          E+  SFL Q+Y
Sbjct: 257 LPGGGDLDVVGVVEVENGLA-LGVLFVRQGVLLDGRSFFWPGLGFAEAPELLWSFLGQFY 315

Query: 306 LSHSEARSIPARIIL 320
                  +IP RI++
Sbjct: 316 ---GPQATIPPRIVV 327



 Score =  103 bits (258), Expect = 2e-26
 Identities = 69/222 (31%), Positives = 98/222 (44%), Gaps = 15/222 (6%)

Query: 396 RMECFDISHTMGESTMASCVVFNQEGPLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQ 455
           R+E  D+SHT G +T    VVF    P  + YR Y       GDDY  +A    RR    
Sbjct: 466 RIEAVDVSHTGGRNTRVGMVVFEDGKPFPEAYRTYAFED-GDGDDYGTLAAWAGRRVES- 523

Query: 456 LDSSKIPDIIFIDGGKGQLNRAYEIISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDG 515
                 PD++ +DGG+GQL         C         +  IAK  T +   +       
Sbjct: 524 --GPPWPDLLLVDGGRGQLAAVVRAFEECGMGAAF--AVASIAKARTEEGRADRRAGNVS 579

Query: 516 DEFHLP---------SDAPALHLIQHIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGP 566
           D   LP         + AP L  +QH+RD  H+++I  HR  R     T  L+ +EG+GP
Sbjct: 580 DRIFLPGRANPLPLRAGAPELLFLQHVRDTVHDYSIGKHRRARAGAALTGELQRVEGIGP 639

Query: 567 KRRQALLKYLGGMQELKRASVEEIAKVPGISHALAENIYQAL 608
              +AL +    +Q +  A VE +A VPG+  A A  ++  L
Sbjct: 640 ATARALWERFDSLQAMADAGVEGLAAVPGVGRARAAALHAHL 681