Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., excinuclease ABC, C subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  413 bits (1061), Expect = e-119
 Identities = 230/615 (37%), Positives = 357/615 (58%), Gaps = 37/615 (6%)

Query: 10  FLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVT 69
           +LKT+   PGVYRM +A++ V+YVGKA++LK R+++Y R +  S +   ++S  A +   
Sbjct: 27  YLKTLDGSPGVYRMLDAQSRVLYVGKARNLKARVSNYARPSGHSARIARMISETASMMFL 86

Query: 70  VTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSA-HKHPRLSSHRGAKKRRGEY 128
            T TETEAL+LE N IKQ  P+YNVLLRDDKS+P I ++  H +P++  HRG K  +G Y
Sbjct: 87  TTRTETEALLLEQNLIKQLKPRYNVLLRDDKSFPNILVAKDHAYPQIRKHRGRKATKGAY 146

Query: 129 FGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGY 188
           +GP+  +GAV  TL+ +QK F +R C D ++ +RTRPCL+YQI RC+GPCV G IS++ Y
Sbjct: 147 YGPFASAGAVNRTLNQLQKAFLLRNCSDAMFESRTRPCLLYQIKRCSGPCV-GYISEEDY 205

Query: 189 QEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDD 248
              V     FL GK  +V   L  +M +A+  + FE AA  RD+I+A+ +VQ  Q ++  
Sbjct: 206 DASVRDAERFLSGKSTEVQERLAVQMTEAAEAMEFERAAALRDRIRAMTQVQSAQGINPR 265

Query: 249 SLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLSQYYLSH 308
            + + DV+    ENG AC+ +  IR  +  G+R  +P+  +     E+ E+FL Q+Y   
Sbjct: 266 GVSEADVIALHLENGQACVQVFFIRANQNWGNRDFYPRTGAGAEAPEILEAFLGQFY--- 322

Query: 309 SEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAI 368
            + +  P +I+L+  + +  + +  A+ E  GRKV   V   G +   +  A  NA  ++
Sbjct: 323 -DQKDPPRQILLSHPI-DNHDLMADALGEKRGRKVEILVPKRGEKAELIAGAERNARESL 380

Query: 369 TTKMNHKMTISQRFKALQEELGMDA-ITRMECFDISHTMGESTMASCVVFNQEGPLKQEY 427
             +M    T ++  + L E   +DA   R+E +D SH  G   + + +V   +G LK +Y
Sbjct: 381 ARRMAESATQTKLLRGLAEAFDLDAPPKRIEVYDNSHIQGTDAVGAMIVSGPDGFLKSQY 440

Query: 428 RRYNITG--ITGGDDYAAMAQVLERRYSKQL------DSSKIPDIIFIDGGKGQLNRAYE 479
           R++NI G  +T GDD+  M +VL+RR+ + L      +S   PD++ IDGG GQ++   +
Sbjct: 441 RKFNIRGTDLTPGDDFGMMKEVLQRRFQRLLKEDPDRESEAWPDLLLIDGGAGQVSAVAD 500

Query: 480 IISSCW-QDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPS--------DAPALHLI 530
           I+     +D P     IG+AKGV R  G E        EFH P         + P L+ +
Sbjct: 501 ILGDLGVEDVP----FIGVAKGVDRDAGKE--------EFHRPGARPTALRHNDPVLYFV 548

Query: 531 QHIRDESHNHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEI 590
           Q +RDE+H  AI  HRA+R K+   + L+ + GVG KR++ALL + G  + + RA++ ++
Sbjct: 549 QRLRDEAHRFAIGTHRAKRSKSVSRTPLDDVPGVGAKRKRALLAHFGSAKAVSRANLSDL 608

Query: 591 AKVPGISHALAENIY 605
             V G+S  +A+ IY
Sbjct: 609 KAVEGVSATMAQTIY 623