Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., excinuclease ABC subunit C (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  320 bits (821), Expect = 8e-92
 Identities = 204/596 (34%), Positives = 315/596 (52%), Gaps = 40/596 (6%)

Query: 17  QPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALVSNIAKIDVTVTHTETE 76
           +PGVY+  N E  +IYVGKAK+LKKR+ SYF K  +  KT+ LVS IA I   V +TE +
Sbjct: 23  KPGVYQYLNTEGTIIYVGKAKNLKKRVYSYFSKEHEPGKTRVLVSKIADIRYIVVNTEED 82

Query: 77  ALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRGAKKRRGEYFGPYPDSG 136
           AL+LE+N IK+Y P+YNVLL+DDK+YP I +     PR+   R   K    Y+GPY    
Sbjct: 83  ALLLENNLIKKYKPRYNVLLKDDKTYPSICVQNEYFPRIFRTRKIIKNGSSYYGPYSHLP 142

Query: 137 AVRETLHLIQKIFPVRQCE-----DTVYSNRTRPCLMYQIGRCAGPCVKGLISDQGYQEI 191
           ++   L LI+ ++P+R C      + + + + + CL Y I +CAGPCV GL S + Y + 
Sbjct: 143 SMYAVLDLIKHLYPLRTCNLNLSPENIRAGKFKVCLEYHIKKCAGPCV-GLQSHEDYLKN 201

Query: 192 VHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQQFVSDDSLE 251
           +  ++  L+G    +  +LVEKM++ + E++FE+A K +++   I   + +  V    L 
Sbjct: 202 IDEIKEILKGNTQDISRMLVEKMQELANEMKFEEAQKIKEKYLLIENYRSKSEVVSSVLH 261

Query: 252 DLDVLGFAQ-ENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFE---SFLSQYYLS 307
           ++DV    + ++  A ++ L I  G +  + +   K   + S+ E+       + + Y S
Sbjct: 262 NIDVFSIEEDDSNSAFVNYLHITNGAINQAFTFEYKKKLNESKEELLTLGIIEMRERYKS 321

Query: 308 HSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLA--NTNAL 365
           HS    +P  +                  +L    V F V   G + + L L+  N    
Sbjct: 322 HSREIIVPFEL------------------DLELNNVVFTVPQRGDKKKLLDLSILNVKQY 363

Query: 366 TAITTKMNHKMTISQR----FKALQEELGMD-AITRMECFDISHTMGESTMASCVVFNQE 420
            A   K   K+   QR     K +Q EL +D    ++ECFD S+  G   +A+CVVF + 
Sbjct: 364 KADRLKQAEKLNPEQRSMRLLKEIQNELHLDKPPLQIECFDNSNIQGSDAVAACVVFKKA 423

Query: 421 GPLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQL-DSSKIPDIIFIDGGKGQLNRAYE 479
            P K++YR+YNI  + G DDYA+M +V+ RRY + + ++S +PD+I  DGGKGQ+    E
Sbjct: 424 KPSKKDYRKYNIKTVVGPDDYASMKEVVRRRYQRAIEENSPLPDLIITDGGKGQMEVVRE 483

Query: 480 IISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHN 539
           +I     +      I G+AK    +   E L         +   +    L+  I+DE H 
Sbjct: 484 VIE---DELHLNIPIAGLAKDNKHRTS-ELLFGFPAQTIGIKQQSSLFRLLTQIQDEVHR 539

Query: 540 HAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPG 595
            AI  HR +R K +  S L+ I+G+G K + ALLK    ++ +K AS+EEIAKV G
Sbjct: 540 FAITFHRDKRSKRQVASALDSIKGIGEKTKTALLKEFKSVKRIKEASLEEIAKVIG 595