Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., excinuclease ABC subunit UvrC from Bifidobacterium breve UCC2003

 Score =  189 bits (479), Expect = 5e-52
 Identities = 109/303 (35%), Positives = 168/303 (55%), Gaps = 7/303 (2%)

Query: 9   PFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRK-NLDSEKTKALVSNIAKID 67
           P    +  +PGVY+  + +  VIYVGKAK+L+ RLT+YF+   L   +T+ +V     ++
Sbjct: 55  PKTSDIPAKPGVYKWRDGQGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLE 114

Query: 68  VTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKH-PRLSSHRGAKKRRG 126
            TV  TE E+L LE+ +IK++ P++NV  RDDK+YPY+ +S  +  PR+   R  K+R  
Sbjct: 115 WTVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGEQVPRVWVTRSRKRRDT 174

Query: 127 EYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRT---RPCLMYQIGRCAGPCVKGLI 183
            YFGPY     +R +L  + + FPVR C   V+       RPCL+  IG+C+ PCV  + 
Sbjct: 175 RYFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLLASIGKCSAPCVNQIE 234

Query: 184 SDQGYQEIVHYLRLFLQGK-DNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQEQ 242
           +D+ ++ +   L   + G+     ++ L   M++AS EL FE AA+ RDQIQ +  V +Q
Sbjct: 235 ADE-HRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQ 293

Query: 243 QFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESFLS 302
             V  D   D DV GFA +   A +H   +R G + G R+   +   D +  ++    L 
Sbjct: 294 NAVVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIADTDLMADLLV 353

Query: 303 QYY 305
           Q Y
Sbjct: 354 QVY 356



 Score =  115 bits (288), Expect = 7e-30
 Identities = 101/364 (27%), Positives = 164/364 (45%), Gaps = 78/364 (21%)

Query: 314 IPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLANTNALTAIT-TKM 372
           +P  II+    +   E L+  +++  G  VT  V   G + + +  AN NA  A+  +KM
Sbjct: 448 VPREIIVPIEPSRRAE-LESWLTDQRGGAVTIRVASRGDKKQLMDRANENANQALQRSKM 506

Query: 373 NHKMTISQRFKALQE---ELGMD-AITRMECFDISHTMGES-TMASCVVFNQEGPLKQEY 427
           +    +  R +A+ +    LG++ A  R+EC+DIS+T+G +  +AS VVF      K EY
Sbjct: 507 SRISDMGARTQAMNDVAKALGLNQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSEY 566

Query: 428 RRYNITGITGG---DDYAAMAQVLERRY-------------------------------- 452
           RR++I G  G    DD +A+ + L RR+                                
Sbjct: 567 RRFSIRGKDGQGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRAAKAEQQQEQSVSD 626

Query: 453 ---------------SKQLDSSKI-------------PDIIFIDGGKGQLNRAYEIISSC 484
                          S   DSS++             P+++ +DGGK Q+  A + +  C
Sbjct: 627 ANGTSSTTPAAITDASSFADSSEVVQQNTNRHHFAYKPNLVVVDGGKPQVMAAAKALKDC 686

Query: 485 WQDWPKYPKIIGIAKGVTRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNHAIAG 544
             D      + G+AK +      E  +  D     L   +  ++L+Q +RDESH  AI  
Sbjct: 687 GVD---DVAVCGLAKRLE-----EVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITY 738

Query: 545 HRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISHALAENI 604
           HR QR      S L+ I G+G   ++ LL + G ++ ++ AS+E+  +V G+ HA AE +
Sbjct: 739 HRQQRRNGALRSALDEIPGIGESYQKRLLNHFGSVKAMRAASIEDFEQVKGVGHAKAEAL 798

Query: 605 YQAL 608
           Y AL
Sbjct: 799 YAAL 802