Pairwise Alignments

Query, 610 a.a., excinuclease ABC subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., excinuclease ABC subunit C (RefSeq) from Shewanella sp. ANA-3

 Score =  710 bits (1832), Expect = 0.0
 Identities = 360/611 (58%), Positives = 463/611 (75%), Gaps = 5/611 (0%)

Query: 1   MSTQFDSAPFLKTVTNQPGVYRMYNAEAEVIYVGKAKDLKKRLTSYFRKNLDSEKTKALV 60
           MST F++  FL+ V++  GVYRMY+ + +VIYVGKAKDLKKRL+SYFRKNL + KT+ALV
Sbjct: 1   MSTGFNAQSFLRMVSSSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALV 60

Query: 61  SNIAKIDVTVTHTETEALILEHNYIKQYLPKYNVLLRDDKSYPYIFLSAHKHPRLSSHRG 120
           S+I  IDVT+TH+ET+AL+LE++YIKQY+PKYNVLLRDDKSYPYIFLS H+HPRL+ HRG
Sbjct: 61  SHIHHIDVTLTHSETDALLLENDYIKQYMPKYNVLLRDDKSYPYIFLSQHEHPRLAYHRG 120

Query: 121 AKKRRGEYFGPYPDSGAVRETLHLIQKIFPVRQCEDTVYSNRTRPCLMYQIGRCAGPCVK 180
            ++ +G YFGPYP+ GAVRE+LHL+QK+FP+RQC+D  Y +RTRPCL YQ+ RC+ PCV 
Sbjct: 121 PQREKGYYFGPYPNGGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCV- 179

Query: 181 GLISDQGYQEIVHYLRLFLQGKDNQVLSILVEKMEQASRELRFEDAAKARDQIQAIRRVQ 240
           G +S+  Y E V    LFL+GKD QV+S LV KME+A+ +  +E AA+ RDQI A+RRV 
Sbjct: 180 GKVSNAEYDEQVKLASLFLKGKDKQVISELVAKMEEAAGQQAYEQAARFRDQIMALRRVA 239

Query: 241 EQQFVSDDSLEDLDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPSDTSQVEVFESF 300
           EQQ VS ++  D+DV+G    +GIAC H+L IR+GK+ GSRS++P +P+ T   EV  SF
Sbjct: 240 EQQEVSGNT-GDMDVIGVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSF 298

Query: 301 LSQYYLSHSEARSIPARIILNRGLTEETEALQIAISELAGRKVTFHVNPTGTRGRYLKLA 360
           L Q+YL+    R+IP  ++++    EE   L+ A+SE   +K +   N    R  +L+LA
Sbjct: 299 LLQFYLNADIQRTIPKEVVISHHF-EELHELEAAVSEALNKKFSIKTNVRADRASFLRLA 357

Query: 361 NTNALTAITTKMNHKMTISQRFKALQEELGMDA-ITRMECFDISHTMGESTMASCVVFNQ 419
            TNA  A+ T+++HK T+ QRF  L+E L ++A I RMECFDISHTMGEST+ASCVVFN+
Sbjct: 358 LTNATNAVMTRLSHKNTVEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNR 417

Query: 420 EGPLKQEYRRYNITGITGGDDYAAMAQVLERRYSKQLDSSKIPDIIFIDGGKGQLNRAYE 479
           EGP K EYRRYNI GIT GDDYAAM Q + RR+ K   S KIPDI+FIDGG GQL  A +
Sbjct: 418 EGPHKAEYRRYNIEGITPGDDYAAMKQAISRRFDKIDASGKIPDILFIDGGLGQLRIAQQ 477

Query: 480 IISSCWQDWPKYPKIIGIAKGVTRKPGLETLITIDGD-EFHLPSDAPALHLIQHIRDESH 538
           I+   + +  K P++IG+AKG +RKPGLETLI  D +  F L  D+PALHLIQHIRDESH
Sbjct: 478 IVDEKFVNLDKAPQLIGVAKGESRKPGLETLIFGDTETSFSLEDDSPALHLIQHIRDESH 537

Query: 539 NHAIAGHRAQRGKTRRTSTLEGIEGVGPKRRQALLKYLGGMQELKRASVEEIAKVPGISH 598
             AI GHR +R KTR TSTLE I G+GPKRR+ALL++LGG+QE+K ASV E+AKVPGIS 
Sbjct: 538 RFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPGISI 597

Query: 599 ALAENIYQALK 609
            +A+ I+ AL+
Sbjct: 598 EMAQTIHDALR 608