Pairwise Alignments

Query, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., DNA polymerase II (EC 2.7.7.7) from Pseudomonas fluorescens FW300-N2E2

 Score =  798 bits (2062), Expect = 0.0
 Identities = 417/793 (52%), Positives = 550/793 (69%), Gaps = 16/793 (2%)

Query: 3   IEQGFVLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFIEQ-SASQEVMRIAAEL 61
           ++QGFVLTRH RD    T++E WLAT +GP ++ +  +  V F+ Q    Q    +  E 
Sbjct: 3   LQQGFVLTRHWRDTPAGTEVEFWLATDAGPRRVRLPVQTSVAFVPQIQRGQLEALLQGEK 62

Query: 62  SITPSLAPLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMERF 121
            +   L PL L  F  +P+   YC        L   L +A + + EADIR  +R+LMERF
Sbjct: 63  EV--ELRPLDLLDFEHRPVLGLYCQQHAQLMRLDTTLRRAGVEVFEADIRPPERYLMERF 120

Query: 122 IQGSIEFTGQITDFGHYRQVQQAKCRQGDYLPTLNMVSLDIECSEKGLLYSIGLDSPMDS 181
           I   + F G  T  G    VQ     +  Y P L +VSLDIE + +G LYS+ L+   + 
Sbjct: 121 ITAPVWFGGTPTADGLLVDVQMKPAPE--YRPPLRLVSLDIETTAQGELYSVALEGCGER 178

Query: 182 RVIMIGQPEPAETPI----QWVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLLHKR 237
           +V M+G     +T +    ++ E    LLK L  WF +FDPD IIGW++V FD R+LH+ 
Sbjct: 179 QVYMLGPANGDDTGVDFQLEYCESRTLLLKKLNDWFARFDPDAIIGWNLVQFDLRVLHEH 238

Query: 238 AEFHKLKLTIGRAQQPSFFRT-ASQTQQGFISIPGRVVLDGIDTLKTATYHFRSWSLESV 296
           A    + L +GR  +   +R   ++    F S  GR+++DGI++L++AT+ F S+SLE+V
Sbjct: 239 ARRLAVPLRLGRGGEEMQWREHGARNNHFFASAAGRLIIDGIESLRSATWSFPSFSLENV 298

Query: 297 SQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDFAIQRS 356
           +Q LLGEGK+I N + RMDEIN+MF  DKP+LARYNL+DC LV +IFA T LL F ++R+
Sbjct: 299 AQTLLGEGKSIDNPYQRMDEINRMFAEDKPALARYNLKDCELVTRIFAKTELLKFLLERA 358

Query: 357 RLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSIPGLYDSVL 416
            +TG+  DR GGSVAAFT+LY+P +HR G+VAPNL      ASPGG+VMDS PGLY+SVL
Sbjct: 359 SVTGLPADRSGGSVAAFTHLYMPLMHRQGFVAPNLGQRPPEASPGGFVMDSQPGLYESVL 418

Query: 417 VLDFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPGFRGGQFHRTKHFLPEMIEKL 476
           VLD+KSLYPSIIR+FLIDP+GLIEGL+ P  ++   +VPGFRG +F RT+H LP ++ ++
Sbjct: 419 VLDYKSLYPSIIRTFLIDPVGLIEGLRHPADQE---SVPGFRGARFSRTRHCLPAIVARV 475

Query: 477 WAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGCRFFDARLASSITMRGHEIMIQTKRL 536
              R+ AKR      SQA+KIIMN+FYGVLGSSGCRFFD RLASSIT+RGH+IM +T++L
Sbjct: 476 SEGRETAKREHNAPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITLRGHQIMQRTRQL 535

Query: 537 IEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILEL 596
           IEA+G+ VIYGDTDSTFV L   + Q+EA  IG  LV  +NQWW E ++ E+ L S LEL
Sbjct: 536 IEAQGHVVIYGDTDSTFVWLRRAHGQEEAARIGRELVAHVNQWWREQVRDEFGLESALEL 595

Query: 597 EYETHYRRFLMPTIRGSETGSKKRYAGL--KGDGDNEQLIFKGLESARTDWTPLAQRFQH 654
           ++ETH++RFLMPTIRG+E GSKKRYAGL  + DG +E +++KGLE+ RTDW+PLA++FQ 
Sbjct: 596 QFETHFKRFLMPTIRGAEEGSKKRYAGLVTRADGSDE-IVYKGLETVRTDWSPLARQFQQ 654

Query: 655 QLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRRLHEYQKNVPPQVRAARMAD 714
           +LY  IFH Q  + Y+R  V+QTLAG  DD+LVY+KRLRR L +Y++NVPP VRAAR+AD
Sbjct: 655 ELYGRIFHRQPYQDYVRDYVQQTLAGAFDDRLVYRKRLRRPLEDYERNVPPHVRAARLAD 714

Query: 715 DINAKLGRPLQYQYRGTIEYVITVNGPEPKEYSKSPIDYQHYIDKQLKPVADAILPFIGK 774
           + N + GRP QYQ  G I YVITV GPEP E   +PIDY HY+ KQL+PVADAILPF+  
Sbjct: 715 EFNQRQGRPRQYQNGGWISYVITVAGPEPLEIRSAPIDYDHYVSKQLQPVADAILPFVDD 774

Query: 775 QFDELIAPQLGLF 787
            F  L+  Q+GLF
Sbjct: 775 DFSTLVGGQMGLF 787