Pairwise Alignments

Query, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

Subject, 791 a.a., DNA polymerase elongation subunit (family B) from Pseudomonas stutzeri RCH2

 Score =  802 bits (2071), Expect = 0.0
 Identities = 426/795 (53%), Positives = 551/795 (69%), Gaps = 23/795 (2%)

Query: 4   EQGFVLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFI--EQSASQEVMRIAAEL 61
           ++GF+LTRH RD    T+I  WLAT  GP Q+ +  +  V F+  EQ A  E +      
Sbjct: 9   QRGFILTRHWRDTPAGTEISFWLATDDGPRQVCVPHQHSVAFVPEEQHALAEPL---LRR 65

Query: 62  SITPSLAPLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMERF 121
                L PL+L  F  +P+   YC + R     A  L  A + + EADIR  +R+LMERF
Sbjct: 66  ERDAELRPLALCDFRHRPVMGLYCRSYRRLLDCARLLRDAGVDVYEADIRPPERYLMERF 125

Query: 122 IQGSIEFTGQITDFGHYRQVQQAKCRQG-DYLPTLNMVSLDIECSEKGLLYSIGLDSPMD 180
           I   + FT    D    R +   + +   DY P L +VSLDIE + +G LYSI L+    
Sbjct: 126 ITAPVSFT----DAPAGRNLVNTQLKPASDYRPQLRLVSLDIETTARGDLYSIALEGCGQ 181

Query: 181 SRVIMIGQPEPAETP-----IQWVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLLH 235
            +V M+G PE A+       +++ E   +LL+ L AWF   DPD IIGW++V FD R+LH
Sbjct: 182 RQVYMLG-PENAQGTAVDFALEYCESRRELLERLNAWFAAHDPDAIIGWNLVQFDLRVLH 240

Query: 236 KRAEFHKLKLTIGRAQQPSFFRT-ASQTQQGFISIPGRVVLDGIDTLKTATYHFRSWSLE 294
           + ++  ++ L +GR  +   +R    +    F +  GR+++DGI+ L++AT+ F S+SLE
Sbjct: 241 EHSQRLQVPLRLGRGGEEMEWREHGGRGNHFFAATAGRLIIDGIEALRSATWSFPSFSLE 300

Query: 295 SVSQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDFAIQ 354
           +V+Q LLGEGKAI N + RM EI++MF  DKP+LARYNL+DC LV +IFA T LL F ++
Sbjct: 301 NVAQTLLGEGKAIDNPYQRMAEIDRMFAQDKPALARYNLKDCELVTRIFAHTELLTFLLE 360

Query: 355 RSRLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSIPGLYDS 414
           R+ +TG+  DR GGSVAAF +LY+P +HR G+VAPNL      ASPGG+VM+S PGLY+S
Sbjct: 361 RATVTGLAADRSGGSVAAFEHLYMPLMHRQGFVAPNLGERQAEASPGGFVMNSQPGLYES 420

Query: 415 VLVLDFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPGFRGGQFHRTKHFLPEMIE 474
           VLVLD+KSLYPSIIR+FLIDP+GLIEGL+ P     + ++PGFRG +F RT+H LP ++E
Sbjct: 421 VLVLDYKSLYPSIIRTFLIDPVGLIEGLRHP---NDESSIPGFRGARFSRTRHCLPAIVE 477

Query: 475 KLWAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGCRFFDARLASSITMRGHEIMIQTK 534
           ++W  R+ AKR   K  SQA+KIIMN+FYGVLGSSGCRFFD RLASSIT+RGHEIM +T+
Sbjct: 478 RVWEGRETAKREHNKPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITLRGHEIMRRTR 537

Query: 535 RLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSIL 594
            LIEA+G+ VIYGDTDSTFV L   +S  EA  IG  LV+ IN WW EHL+ EY L S L
Sbjct: 538 ELIEAQGHAVIYGDTDSTFVWLRKAHSDGEAACIGRELVQHINDWWCEHLQVEYGLASAL 597

Query: 595 ELEYETHYRRFLMPTIRGSETGSKKRYAGL--KGDGDNEQLIFKGLESARTDWTPLAQRF 652
           EL+YETH+RRFLMPTIRG+E GSKKRYAGL  + DG ++ ++FKGLE+ RTDW+PLAQRF
Sbjct: 598 ELQYETHFRRFLMPTIRGAEEGSKKRYAGLVTRPDG-SDGMVFKGLETVRTDWSPLAQRF 656

Query: 653 QHQLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRRLHEYQKNVPPQVRAARM 712
           Q +LYQ IFH Q    Y+R  V +TLAG+LDD L+Y+KRLRRRL +YQ+NVPP VRAAR+
Sbjct: 657 QQELYQRIFHRQPHRDYVREYVRRTLAGELDDLLIYRKRLRRRLDDYQRNVPPHVRAARL 716

Query: 713 ADDINAKLGRPLQYQYRGTIEYVITVNGPEPKEYSKSPIDYQHYIDKQLKPVADAILPFI 772
           AD+ N + GRP QYQ  G I Y+ITV GPEP E   S IDY HY+ +QL+PVADAILPF+
Sbjct: 717 ADEFNERQGRPRQYQNGGWISYLITVAGPEPLETRSSVIDYDHYVTRQLQPVADAILPFV 776

Query: 773 GKQFDELIAPQLGLF 787
           G  F  L+  QLGLF
Sbjct: 777 GDDFASLVDGQLGLF 791