Pairwise Alignments

Query, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

Subject, 801 a.a., DNA polymerase II (RefSeq) from Shewanella amazonensis SB2B

 Score =  655 bits (1690), Expect = 0.0
 Identities = 359/790 (45%), Positives = 493/790 (62%), Gaps = 22/790 (2%)

Query: 5   QGFVLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFIEQSASQEVMRIAAELSIT 64
           +G VLTR     +G T +E  + T +GP ++ +  +RP+ F      + ++   AE  + 
Sbjct: 21  RGRVLTRANVQRSGDTVLEYLIKTVNGPVKVEVHNQRPMAFCHSDDVERLLVEGAETEVW 80

Query: 65  PSLAPLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMERFIQG 124
               PL L+SF+ QP+ A YC T    + L  +  +  + + EADI+   RFL+ERF+  
Sbjct: 81  SH--PLELQSFSRQPVHAIYCRTGLMLKRLVNRAQELGIALYEADIKPEQRFLIERFVAL 138

Query: 125 SIEFTGQITDFGHYRQVQQAKCRQGDYLPTLNMVSLDIECSEKGLLYSIGLDSPMDSRVI 184
             EF G     G  R V         ++P L  VSLDIECS  G LYSIGL    + +VI
Sbjct: 139 DAEFFGHFDSSGPSRFVASRVRATSQHIP-LKAVSLDIECSMSGELYSIGLYGDCEPKVI 197

Query: 185 MIGQPEPAET----------PIQWVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLL 234
           ++G+ E   T           ++W  DE  LL +L  WF + DPD+++GW+VV FD  LL
Sbjct: 198 IVGEGETELTCHRDGVEHKVAVEWACDEVALLLSLQRWFMEVDPDILLGWAVVTFDLSLL 257

Query: 235 HKRAEFHKLKLTIGRAQQPSFFRTASQTQQGFISIPGRVVLDGIDTLKTATYHFRSWSLE 294
            +RA+ H ++L IGR  +P  ++   + +   + + GRVVLDGID LK A Y F S++L+
Sbjct: 258 WRRAKHHGMRLCIGRFGKPLAWKVEDKHRPETLDLSGRVVLDGIDWLKAAFYQFDSFALD 317

Query: 295 SVSQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDFAIQ 354
            V+ ELLGEGKAIHN  DR +EI ++FR DK +LA YNL DC LV  IF  T L+ FA++
Sbjct: 318 RVAGELLGEGKAIHNPDDRGEEITRLFREDKAALAYYNLTDCRLVWDIFQKTDLIHFALE 377

Query: 355 RSRLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSIPGLYDS 414
           R+RLTG+E  R+G S+AAF +LYLP LHRAG+VAP +Q      SPGGYVMDS+PGLY +
Sbjct: 378 RARLTGLEFGRVGASIAAFNHLYLPHLHRAGFVAPAMQTVPGPDSPGGYVMDSVPGLYRN 437

Query: 415 VLVLDFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPGFRGGQFHRTKHFLPEMIE 474
           VLVLD+KSLYPSIIR+FLIDP GL+ GL  P       +V GFRG +F R    LP+++ 
Sbjct: 438 VLVLDYKSLYPSIIRTFLIDPKGLVLGLSEPEAM----SVEGFRGARFSRQSPILPKLVA 493

Query: 475 KLWAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGCRFFDARLASSITMRGHEIMIQTK 534
            L + R+EAK NQ    SQA+KIIMNS YGVLGS GC F D RLASSIT+RGHEIM  TK
Sbjct: 494 TLASRREEAKANQNGPMSQAVKIIMNSLYGVLGSRGCVFHDYRLASSITLRGHEIMRTTK 553

Query: 535 RLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSIL 594
             IEA G+QVIYGDTDSTFV LG +    +A   G ALV  +NQ W E L+++  L   L
Sbjct: 554 AWIEAEGFQVIYGDTDSTFVWLGDEAGNAKA--TGRALVDMVNQRWREQLREDKGLECFL 611

Query: 595 ELEYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDNEQLIFKGLESARTDWTPLAQRFQH 654
           ELE+E H+ +F MPT+R S  GSKKRY GL  +G+ + L+FKG+E  R+DW+PLA+R Q+
Sbjct: 612 ELEFERHFEQFFMPTLRHSTEGSKKRYVGLYDNGNEKVLVFKGMEQVRSDWSPLARRVQY 671

Query: 655 QLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRRLHEYQKNVPPQVRAARMAD 714
           +LY+ +F  ++   Y++ + +   +G+LDD+LV+ KRL+R + +Y     P V+AA +  
Sbjct: 672 ELYRRLFQQENLTEYVQEVEKSLYSGELDDELVFHKRLKRDISQYTAKSAPHVKAAAL-- 729

Query: 715 DINAKLGRPLQYQYRGTIEYVITVNGPEPKEYSKSPIDYQHYIDKQLKPVADAILPFIGK 774
            + +  G   + +    I Y+ T  G EP  +   PIDY +Y D+QL P+ + IL  +  
Sbjct: 730 -LVSATGDANRGKRGAAIRYLFTKAGAEPLGFQSQPIDYDYYYDRQLLPILEPILAVLKI 788

Query: 775 QFDELIAPQL 784
            + +  A QL
Sbjct: 789 NYQKSGAEQL 798