Pairwise Alignments

Query, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

Subject, 795 a.a., DNA polymerase II (RefSeq) from Shewanella loihica PV-4

 Score =  639 bits (1649), Expect = 0.0
 Identities = 365/807 (45%), Positives = 493/807 (61%), Gaps = 41/807 (5%)

Query: 5   QGFVLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFIEQSASQEVMRIAAELSIT 64
           +G +LTRH +     +++  +L+T  GP ++ +     + F        ++    E  I 
Sbjct: 4   KGRILTRHHQG----SELHYYLSTAEGPARVIVPNGERICFCRTQDELRLLGDNRESGIR 59

Query: 65  PSLAPLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMERFIQG 124
                L+L +F  +P++A Y    +  + L+       + + E+++R   R+L+ER+I  
Sbjct: 60  SEA--LNLTTFQDEPVSALYFANNQSFRHLSRIATDKGISLYESELRAEQRYLIERYIAL 117

Query: 125 SIEFTGQITDFGHYRQVQQAKCRQGDYLPT-----LNMVSLDIECSEKGLLYSIGLDSPM 179
            +EF G+            A+  +   L       L +VSLD EC+  G L+S+GL    
Sbjct: 118 DVEFIGRWQSQALDTPTLIAERARRSELDVNREVKLAVVSLDFECAMDGELFSVGLYGQS 177

Query: 180 DS-----RVIMIGQPEPAETPIQW---VEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDF 231
            S     +VIM+G  E  ++P ++   V +E  L+K+L+ WF+  DPD+IIGW+VV FD 
Sbjct: 178 ASGEPYQQVIMVG--EACDSPPEYLSLVPNEAALIKSLLDWFKLNDPDIIIGWAVVTFDL 235

Query: 232 RLLHKRAEFHKLKLTIGRAQQPSFFRTASQTQQGFISIPGRVVLDGIDTLKTATYHFRSW 291
            LL++RA    + LT+GR      +R  ++ +   + +PGRVVLDGID LK A Y F S+
Sbjct: 236 ALLYRRARALNIPLTLGRLGTQLSWRVDNKYRPETLILPGRVVLDGIDWLKAAFYQFDSF 295

Query: 292 SLESVSQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDF 351
           SLESV++ELLGEGKAIHNV  R +EI  +FR DK +LA YN+ DC LV +IFA T LL F
Sbjct: 296 SLESVARELLGEGKAIHNVSHRAEEIATLFREDKAALAHYNITDCRLVWEIFAKTDLLAF 355

Query: 352 AIQRSRLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSIPGL 411
            ++RSRLTG+EL R+G SVAAF NLYLP LHRAGYVAP++   + + SPGGYVMDS PGL
Sbjct: 356 VMERSRLTGLELGRVGASVAAFNNLYLPHLHRAGYVAPSVPVSDGIESPGGYVMDSKPGL 415

Query: 412 YDSVLVLDFKSLYPSIIRSFLIDPLGLIEGLKLPIG------KQADHAVPGFRGGQFHRT 465
           Y  +LVLDFKSLYPSIIR+FLIDP GL+EGLK          ++ +  VPGF G QF R 
Sbjct: 416 YQHILVLDFKSLYPSIIRTFLIDPKGLVEGLKAEANAGVKGVREGNDTVPGFLGAQFSRN 475

Query: 466 KHFLPEMIEKLWAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGCRFFDARLASSITMR 525
              LPE+I  L A R+EAKR      SQAIKIIMNS YGVLGS GC F DARLASSIT+R
Sbjct: 476 SPILPELIASLSAKREEAKREANAPLSQAIKIIMNSLYGVLGSRGCVFHDARLASSITLR 535

Query: 526 GHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLK 585
           GHEIM QTK+ IEA G  VIYGDTDSTFV +       + +     LV  IN+ W   LK
Sbjct: 536 GHEIMKQTKQWIEALGLTVIYGDTDSTFVHISSPERVGDINAFARELVASINEKWRLKLK 595

Query: 586 QEYALTSILELEYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDNE-QLIFKGLESARTD 644
           QE+ L   LELEYE H+ +F MPT+RGS  GSKKRY G     D   +L+FKG+E  R+D
Sbjct: 596 QEFQLECYLELEYERHFEQFFMPTLRGSTEGSKKRYVGAYRQEDQSLKLVFKGMEQVRSD 655

Query: 645 WTPLAQRFQHQLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRRLHEYQKNVP 704
           W+PLA+  Q +LY  +F  QD   Y++ IV+    G+LDD+L++ KRLRR + +Y     
Sbjct: 656 WSPLAREVQAELYYRLFAKQDVLGYLKQIVDALQRGELDDRLIFSKRLRRNIEDYTAKSS 715

Query: 705 PQVRAA-----RMADDINAKLGRPLQYQYRGTIEYVITVNGPEPKEYSKSPIDYQHYIDK 759
           P V+AA     R  +D + K G          I Y++T NG EP ++    IDYQ+Y+DK
Sbjct: 716 PHVKAATLWCQRSGNDSHGKRGE--------KISYLMTQNGAEPVQHLLGKIDYQYYLDK 767

Query: 760 QLKPVADAILPFIGKQFDELIAPQLGL 786
           Q+ P++D IL  +   F+ L+A Q+ L
Sbjct: 768 QIAPISDPILSILNTSFNNLVAKQMSL 794