Pairwise Alignments

Query, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

Subject, 808 a.a., DNA polymerase II (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  651 bits (1679), Expect = 0.0
 Identities = 370/817 (45%), Positives = 493/817 (60%), Gaps = 48/817 (5%)

Query: 8   VLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFIEQSASQEVMRIAAELSITPSL 67
           +LTRHA    G   ++ +LAT SGP  + +     + F  Q+  Q     A +L  TP L
Sbjct: 1   MLTRHAIARDGNLLLQYYLATESGPVLMELPDTEYICFCHQTDIQ-----ALQLQ-TPGL 54

Query: 68  A----PLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMERFIQ 123
           A    PL L+SF  Q +A  Y  +    + L      A + + EADIR   RFL+ERF+ 
Sbjct: 55  ALRFVPLELKSFKRQAVAGIYAKSSSAFRSLQRIANDAGIPLFEADIRPEQRFLIERFVA 114

Query: 124 GSIEFTGQITDF-----------------------GHYRQVQQAKCRQGDYLPTLNM--V 158
             + F G   +                        GH       + +     PT+ +  +
Sbjct: 115 LDVAFLGHYANKIANNIKCDNDSAIQAINKSENSQGHLSVFTAMRAKAIAPQPTIKLRSI 174

Query: 159 SLDIECSEKGLLYSIGL-----DSPMDSRVIMIGQPEP-AETPIQWVEDEYQLLKALIAW 212
           SLD ECS  GLLYS+ L      +    +VIM+G+ +  A   I+WV DE  L++ LIAW
Sbjct: 175 SLDFECSFDGLLYSVALYGRDAQAQPYEKVIMVGEVQSDAPQYIEWVSDEAMLIRRLIAW 234

Query: 213 FEQFDPDVIIGWSVVDFDFRLLHKRAEFHKLKLTIGRAQQPSFFRTASQTQQGFISIPGR 272
           F +FDPDVIIGWSVV FD  LL++RA  H++ L +GR      ++  ++ +   +++PGR
Sbjct: 235 FAEFDPDVIIGWSVVTFDLALLYRRALLHRIPLRLGRGGALLEWKVDNKFRPETLNLPGR 294

Query: 273 VVLDGIDTLKTATYHFRSWSLESVSQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYN 332
           VVLDGID LK A YHF  +SLE V+Q LLGEGKAIH+V +R+ EI+ +F  DK SLA YN
Sbjct: 295 VVLDGIDWLKAAFYHFERFSLEFVAQALLGEGKAIHDVENRVQEIDALFTEDKQSLAHYN 354

Query: 333 LQDCVLVNKIFAATHLLDFAIQRSRLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQ 392
           L D  LV  IF  T L DFA+ R+ LTG+EL R+G SVAAF +LYLP LHRAGYVAP   
Sbjct: 355 LTDSRLVWDIFEHTQLWDFALARAELTGLELGRVGASVAAFNHLYLPHLHRAGYVAPAEP 414

Query: 393 PENWVASPGGYVMDSIPGLYDSVLVLDFKSLYPSIIRSFLIDPLGLIEGL-KLPIGKQAD 451
               + SPGGYVMDS+PG Y  +LV DFKSLYPSIIR+FLIDP GLIEGL    +     
Sbjct: 415 ASQGIESPGGYVMDSVPGFYQHILVFDFKSLYPSIIRTFLIDPKGLIEGLGDDSLVLDES 474

Query: 452 HAVPGFRGGQFHRTKHFLPEMIEKLWAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGC 511
             V GF G +F R +  LP++I+ L   R++AKR      SQAIKIIMNS YGVLGS GC
Sbjct: 475 ETVTGFLGARFSRRQPILPKLIQTLSEQREKAKREANAPLSQAIKIIMNSLYGVLGSQGC 534

Query: 512 RFFDARLASSITMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHA 571
            F DA+LASSITMRGH+IM QT+  IE  GYQVIYGDTDSTFV LG +    +   +G  
Sbjct: 535 VFHDAKLASSITMRGHQIMKQTRAWIEEMGYQVIYGDTDSTFVHLGYEPDLSDISALGKQ 594

Query: 572 LVREINQWWTEHLKQEYALTSILELEYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDNE 631
           +  +IN  W   + +++ L S LEL++E HY +F MPT+RGSE GSKKRY G   +   E
Sbjct: 595 IAAQINANWQAKITKDFELESFLELQFERHYEQFFMPTLRGSEEGSKKRYVGAWRNVSGE 654

Query: 632 -QLIFKGLESARTDWTPLAQRFQHQLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQK 690
            ++ FKG+E  R+DW+PLA++ Q +LY+ +F+ +D   Y+  ++ +  AG+ DD+L++ K
Sbjct: 655 LEITFKGMEQVRSDWSPLARKVQAELYERMFNQRDISGYLADVIGELQAGKRDDELIFSK 714

Query: 691 RLRRRLHEYQKNVPPQVRAARMADDINAKLGRPLQYQYRGT-IEYVITVNGPEPKEYSKS 749
           R+RR L EY     P V+ AR   ++  K      Y  RG  I+YVITVNGPEP  +  S
Sbjct: 715 RMRRNLEEYTAKSSPHVKVARQLCELTGK----ASYSKRGAQIDYVITVNGPEPVSHRSS 770

Query: 750 PIDYQHYIDKQLKPVADAILPFIGKQFDELIAPQLGL 786
            IDYQ+YIDKQ+ P+A+ +   +   +  + + QL L
Sbjct: 771 TIDYQYYIDKQIGPIAEPVFSIMKLNYTNIASKQLSL 807