Pairwise Alignments

Query, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

Subject, 810 a.a., DNA polymerase II (RefSeq) from Shewanella sp. ANA-3

 Score =  663 bits (1710), Expect = 0.0
 Identities = 377/804 (46%), Positives = 493/804 (61%), Gaps = 38/804 (4%)

Query: 5   QGFVLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFIEQSASQEVMRIAAELSIT 64
           QG VLTRHA        ++ +LAT SGP  + +     + F  QS       +AA    T
Sbjct: 18  QGRVLTRHAITRGATLVLQYYLATVSGPVLVELPDSEYICFCHQSD------MAALQLQT 71

Query: 65  PSLA----PLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMER 120
           P LA    PL+L+SF  Q +AA Y  +    + L      A + + EADIR   RFL+ER
Sbjct: 72  PGLALRFVPLTLKSFKRQSVAAIYAPSSSVFRHLQRIATDAGIPLFEADIRPEQRFLIER 131

Query: 121 FIQGSIEFTG----------QITDFGHYRQVQQAKCRQGDYLPTLNMVSLDIECSEKGLL 170
           F+   + F G          Q++ F   R    AK         L  +SLD ECS  GLL
Sbjct: 132 FVALDVAFLGHFVGKAGIDGQLSVFSAIR----AKAVAPQSAIKLRSISLDFECSFDGLL 187

Query: 171 YSIGL-----DSPMDSRVIMIGQPEP-AETPIQWVEDEYQLLKALIAWFEQFDPDVIIGW 224
           YS+ L      S    +VIM+G+ +P A   I+WV DE  L+  LI WF +FDPDVIIGW
Sbjct: 188 YSVALYGRDAQSQPYEKVIMVGEAQPDAAIYIEWVNDEAALIHRLITWFTEFDPDVIIGW 247

Query: 225 SVVDFDFRLLHKRAEFHKLKLTIGRAQQPSFFRTASQTQQGFISIPGRVVLDGIDTLKTA 284
           SVV FD  LL++RA  H++ L IGR      ++  ++ +   +S+PGRVVLDGID LK A
Sbjct: 248 SVVTFDLALLYRRALLHRIPLRIGRGGALLEWKVENKFRPETLSLPGRVVLDGIDWLKAA 307

Query: 285 TYHFRSWSLESVSQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFA 344
            Y F  +SLE V+Q LLGEGKAIH+V +R  EI+ +F  +K  LA YNL D  LV  IF 
Sbjct: 308 FYQFERFSLEFVAQALLGEGKAIHDVENRAQEIDSLFAENKQGLAHYNLTDSRLVWDIFE 367

Query: 345 ATHLLDFAIQRSRLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYV 404
            T L DFA+ R+ LTG+EL R+G SVAAF +LYLP LHRAG+VAP       + SPGGYV
Sbjct: 368 HTQLWDFALARAELTGLELGRVGASVAAFNHLYLPHLHRAGFVAPAEPASQGIESPGGYV 427

Query: 405 MDSIPGLYDSVLVLDFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQAD--HAVPGFRGGQF 462
           MDS+PG Y  +LV DFKSLYPSIIR+FLIDP GLIEGL    G   D    VPGF G +F
Sbjct: 428 MDSVPGFYQHILVFDFKSLYPSIIRTFLIDPKGLIEGLDNEDGSALDEPETVPGFLGARF 487

Query: 463 HRTKHFLPEMIEKLWAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGCRFFDARLASSI 522
           +R +  LP++I+ L   R++AKR      SQAIKIIMNS YGVLGS GC F DA+LASSI
Sbjct: 488 NRHQPILPKLIQNLSEQREKAKREANAPLSQAIKIIMNSLYGVLGSQGCVFHDAKLASSI 547

Query: 523 TMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTE 582
           TMRGH+IM QT+  IE  GYQVIYGDTDSTFV LG +    + + +G  +   +NQ W  
Sbjct: 548 TMRGHQIMKQTRAWIEEMGYQVIYGDTDSTFVYLGPEPDLSDINALGKQIAARMNQQWQS 607

Query: 583 HLKQEYALTSILELEYETHYRRFLMPTIRGSETGSKKRYAGL-KGDGDNEQLIFKGLESA 641
            + QE+ L S LEL++E HY +F MPT+RGSE GSKKRY G  + +    ++ FKG+E  
Sbjct: 608 KIAQEFQLESFLELQFERHYEQFFMPTLRGSEEGSKKRYVGAWRNNSGALEITFKGMEQV 667

Query: 642 RTDWTPLAQRFQHQLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRRLHEYQK 701
           R+DW+PLA++ Q +LY+ +F+ +D   Y+  ++ +  AG+ DD+LV+ KR+RR L EY  
Sbjct: 668 RSDWSPLARKVQAELYERMFNQRDISGYLADVIGELQAGKRDDELVFSKRMRRNLDEYTA 727

Query: 702 NVPPQVRAARMADDINAKLGRPLQYQYRGT-IEYVITVNGPEPKEYSKSPIDYQHYIDKQ 760
              P V+ AR   ++  K      +  RG  I+YVITVNGPEP  +  S IDYQ+YIDKQ
Sbjct: 728 KSSPHVKVARQLCELTGK----SSFGKRGAQIDYVITVNGPEPVSHRSSTIDYQYYIDKQ 783

Query: 761 LKPVADAILPFIGKQFDELIAPQL 784
           + P+A+ +   +   +  + + QL
Sbjct: 784 IGPIAEPVFSIMKLNYTSITSNQL 807