Pairwise Alignments

Query, 704 a.a., diguanylate phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  130 bits (326), Expect = 3e-34
 Identities = 79/251 (31%), Positives = 141/251 (56%), Gaps = 8/251 (3%)

Query: 441 KREREQLKVEQQLQ-MMSSKEFCLEYQPQVCHRTGQVIGCEALIRAKDQQDNILSPATFL 499
           +R   +L+ E  L   + + EF L +QP++  +TG++ GCEALIR + +   ++SP +F+
Sbjct: 416 ERAAVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITGCEALIRWQ-KDGRLISPMSFI 474

Query: 500 PSLAKAGLMKEMDLWVVKQATSDVRKLTNVGVY-VPVSINLTAETLMDLTVMAQIEEII- 557
           P   + G++  +  WV++Q+   +R+      Y +P++IN+ ++   D ++++ I+++  
Sbjct: 475 PVAEETGIIIPIGRWVIEQSCRVLREWQKKYNYAIPIAINVASQQFADASLVSDIKQMAL 534

Query: 558 --RSVAGLIHIELTEESLLADEQRLTWVFNQLHQLGVKIYIDDFGTGYSSLSYLHRFDVD 615
             +    L+ IE+TE SL+ D +       QL   G  I +DDFGTGYSSLSYL    + 
Sbjct: 535 RYQIQPELLEIEITETSLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPIT 594

Query: 616 GIKIDRSFVLALVSEKGRKVFANLQLVAHSLELETIIEGVETQEQLDAMGDEYPFSVQGW 675
            +KIDR FV  L  +    + + + ++   L L  + EG+E + QLD +        QG+
Sbjct: 595 TMKIDRCFVSDLPGDSA--IASTILMLGKQLNLTIVAEGIENELQLDWLKSNECQIGQGF 652

Query: 676 FYSKSLNRGDF 686
           ++S+ L + DF
Sbjct: 653 YFSQPLPQADF 663