Pairwise Alignments

Query, 704 a.a., diguanylate phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  144 bits (362), Expect = 3e-38
 Identities = 86/245 (35%), Positives = 140/245 (57%), Gaps = 10/245 (4%)

Query: 446  QLKVEQQLQM-MSSKEFCLEYQPQVCHRTGQVIGCEALIRAKDQQDNILSPATFLPSLAK 504
            ++++EQ+L+  ++  EF L YQP V  +TG+V   EALIR +D    ++ P  F+    +
Sbjct: 805  RMELEQRLRRAVAQDEFTLHYQPIVEMKTGKVCSVEALIRWQDPDLGLIPPDQFIGIAEE 864

Query: 505  AGLMKEMDLWVVKQATSDVRKLTNVGVYVPVSINLTAETLMDLTVMAQIEEIIRSVAGL- 563
             GL++ M  WV+ QA  D+R+   +G+ + V+IN+++   ++   M   +++++      
Sbjct: 865  TGLIEPMGEWVLNQAMHDLRQWQQLGLQLNVAINVSSRQCVNARGMG-FDQVLQECFNRH 923

Query: 564  ------IHIELTEESLLADEQRLTWVFNQLHQLGVKIYIDDFGTGYSSLSYLHRFDVDGI 617
                  +HIE+TE  L+ D          + +LG +IYIDDFGTGYSSLSYL +F +  I
Sbjct: 924  HINPRNVHIEITESMLMGDASHCLSTLEAIRRLGSQIYIDDFGTGYSSLSYLKKFPISVI 983

Query: 618  KIDRSFV-LALVSEKGRKVFANLQLVAHSLELETIIEGVETQEQLDAMGDEYPFSVQGWF 676
            KIDRSFV  AL +     +   + ++  SLE+E + EG+ET+ Q + + D      QG+ 
Sbjct: 984  KIDRSFVENALSNNSNTNLVKAIVMMGQSLEMELVAEGIETEAQWNLLRDLGCHYAQGYL 1043

Query: 677  YSKSL 681
             SK L
Sbjct: 1044 ISKPL 1048