Pairwise Alignments

Query, 315 a.a., DUF3187 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  226 bits (576), Expect = 6e-64
 Identities = 126/324 (38%), Positives = 178/324 (54%), Gaps = 11/324 (3%)

Query: 1   MRFIPLLSLICTLVAFP-----SLANEYRYGPFINYAQAPLASHSLTPQLRDGFSLPLDS 55
           M F  L S++   + FP     +  +   YGP   YAQ+P  + SLTP LR GFSLP   
Sbjct: 1   MPFSHLKSVLTLSLLFPPNVLATAVDFSDYGPLRTYAQSPAQAGSLTPMLRSGFSLPEGQ 60

Query: 56  QELFGGFSAASIWSDSPGYEGDFYQNQFTLGLKWQFAPRWQAELSYRFSQAWDNQLDSLT 115
           +EL    SAAS+W+++  Y  D+Y N    GL WQ   +W  + SY +  + DN LDS+T
Sbjct: 61  KELHLSASAASVWAETDDYFADYYHNTLEGGLTWQVNDKWMIDTSYHWRFSGDNHLDSVT 120

Query: 116 MGFHDLFGLDQNGRDSVDKHRFHIAVPEHKIAWDDFSGSTLSSAFSVYTQYQIHTSEQHG 175
           M FHD FG  QNGR+   KH+  I   +  +   + SG  L++   +Y  YQ+  ++  G
Sbjct: 121 MWFHDAFGFSQNGREDAAKHQNQI-FSKDGVNQQNISGENLNNVVILYVGYQLFENQYQG 179

Query: 176 LSLGATLYYN--QNGLLRLNRFEQALQLNYTYQQDAHRIYGLLGVVHH--NSATGTLPTK 231
           LSLG +LYYN   +G      FEQALQLNY+++ + H I+    V     N     +   
Sbjct: 180 LSLGGSLYYNYVDSGPFEDESFEQALQLNYSFRYEKHHIHSTAAVSFRQGNEVLSGISYD 239

Query: 232 KSTLTVAAGYEYQLNTKHHLFSSFHFYQGTVESPKELEKPATEYVLGYRYVMPSSALELA 291
               +V  GYEY L  +H      H YQG +E+  +  K + E +LGYRY + +SA+E +
Sbjct: 240 NHAYSVNLGYEY-LTGRHGWLLELHHYQGLLETENDFSKASNEILLGYRYYLDTSAIEFS 298

Query: 292 LTENVFSTDNSTDIALHISYRYRL 315
           + EN F+ DNSTDIA +I YR +L
Sbjct: 299 IVENYFNMDNSTDIAFNIGYRVKL 322