Pairwise Alignments

Query, 223 a.a., lipoprotein from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., outer membrane protein A (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 5/122 (4%)

Query: 101 VVRVGENQLMLRME---NGIGFTSNSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDS 157
           VV++ E +  +  E   N + F  NS  L++        V   L ++P  S VI GHTDS
Sbjct: 213 VVQIVEKRQFVYSEQKGNSLLFAHNSSVLNNT--SQFADVVSFLKQHPTASAVITGHTDS 270

Query: 158 TGSDTTNQVLSEKRAESVRSFLLSQGVAAGRAIARGNGERFPLCSNNTAEGRACNRRVEI 217
           TGSD  NQ LSE+RA SV ++L+SQGV + +  + G GE   +  N T  GRA NRRVEI
Sbjct: 271 TGSDKYNQWLSERRAISVANYLVSQGVQSAQLTSVGKGETASVADNTTENGRAMNRRVEI 330

Query: 218 QI 219
            I
Sbjct: 331 TI 332