Pairwise Alignments

Query, 443 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 820 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  108 bits (269), Expect = 8e-28
 Identities = 68/163 (41%), Positives = 95/163 (58%), Gaps = 6/163 (3%)

Query: 273 MAHRDALTGAINRHGIRDWLQDQ-ARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331
           +A RD LTG INR    D L+   AR  R+    V+V+ ID+D FK VND  GH  GD L
Sbjct: 375 LAQRDPLTGLINRRSFFDDLEKAVARAGRFPAAGVAVISIDLDRFKYVNDSLGHQAGDCL 434

Query: 332 LREFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGG-- 389
           L+E A V+   +RE+D L R GG+EF V       E A+ +AE LR  +AD+++ + G  
Sbjct: 435 LKEVAEVLFGRLRETDLLARLGGDEFAVLLHGVNREGALHVAEALRLCLADYAFSYDGKS 494

Query: 390 -AITCSIGIAQMGD--ERITETVSRADEALYRAKRLGRNRIEV 429
             I CS+G+A      +   + ++RAD A+  AKR GRNR+ +
Sbjct: 495 VEIGCSLGVATWAADVDDPEDLLARADMAMRLAKRAGRNRVHL 537



 Score = 25.8 bits (55), Expect = 0.005
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 382 DHSWIHGGAITCSIGIAQMGDERITETVSR 411
           D  W+ GG ++ ++    +GD RI   V R
Sbjct: 633 DAGWLEGGFLSFNLSAQSVGDGRIFSAVRR 662