Pairwise Alignments

Query, 443 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 485 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  119 bits (297), Expect = 3e-31
 Identities = 69/172 (40%), Positives = 96/172 (55%), Gaps = 4/172 (2%)

Query: 260 NHSLHEQNIKFVEMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQV 319
           N +L     K   MA  D LTGA NR    ++        +     +S+L IDID+FK+V
Sbjct: 310 NMTLGRYQRKLEIMASTDKLTGAANRQVFEEYFHQALDKAKLSQTSISILLIDIDHFKKV 369

Query: 320 NDVYGHSLGDDLLREFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAK 379
           ND YGHS+GD +L+    ++  +++  D L RWGGEEF+V   +  L +A ELAER R  
Sbjct: 370 NDSYGHSVGDLVLKTVTNLLRSQLKPQDILCRWGGEEFLVLLPEMDLSRAAELAERFRDS 429

Query: 380 IADHSWIHGG---AITCSIGIAQMGD-ERITETVSRADEALYRAKRLGRNRI 427
           I+       G   AIT SIG+A+    E   + + RAD ALY+AK  GRN++
Sbjct: 430 ISQRELKVNGVHIAITVSIGVAEYQKLEPAEDLIKRADLALYQAKEAGRNQV 481