Pairwise Alignments

Query, 443 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (279), Expect = 4e-29
 Identities = 67/201 (33%), Positives = 111/201 (55%), Gaps = 7/201 (3%)

Query: 237 LEIRRNRREVLRARMRQEHLQRLNHSLHEQNIKFVEMAHRDALTGAINRHGIRDWLQDQA 296
           +E   N R   + + R   L+     LHE N K  E +  D+LTG  NR      L  ++
Sbjct: 417 VEAETNERLEQKVQERTLELEITLRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAES 476

Query: 297 RLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLLREFALVISREI-RESDKLVRWGGE 355
           R+ R Q   +++L +DID FK +ND +GH  GD  L+  A  + + + R +D + R+GGE
Sbjct: 477 RISRRQETPIALLMLDIDRFKSINDQFGHLAGDQALKLIAQTLQQHLKRPTDLVSRFGGE 536

Query: 356 EFVVFCAQTTLEQAIELAERLRAKIADHSWIHGG---AITCSIGIAQ---MGDERITETV 409
           EF +    TT + A+++AE +R  ++       G    +T SIG++    M ++  TE +
Sbjct: 537 EFAIILPNTTADGALQVAESIRDTVSCIGLTWEGKPIPLTVSIGVSADVIMNEQHSTELL 596

Query: 410 SRADEALYRAKRLGRNRIEVH 430
            +AD+ALY+AK  GRN+++++
Sbjct: 597 EQADKALYQAKNSGRNQVKLY 617