Pairwise Alignments

Query, 443 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (267), Expect = 5e-28
 Identities = 69/161 (42%), Positives = 87/161 (54%), Gaps = 10/161 (6%)

Query: 274 AHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLLR 333
           A  D LT   NR      +QD       Q    S+L IDID FK  ND YGH +GD +L 
Sbjct: 156 AMTDQLTSLHNRRAYEIAIQDHIHRAEEQHTRCSLLLIDIDRFKVFNDTYGHQVGDKVLA 215

Query: 334 EFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHG----- 388
             AL + + +R  D + R+GGEEFVV    T    A+++AE LR +I++     G     
Sbjct: 216 YVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETLRGRISERRLAIGKDKKL 275

Query: 389 --GAITCSIGIA--QMGDERITETVSRADEALYRAKRLGRN 425
             GAIT SIG+A  Q GD+  T   SRAD+ALY AK  GRN
Sbjct: 276 SLGAITVSIGLASLQKGDDAET-LFSRADKALYEAKSDGRN 315