Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

 Score =  159 bits (403), Expect = 2e-43
 Identities = 147/591 (24%), Positives = 267/591 (45%), Gaps = 35/591 (5%)

Query: 5   KQRSLNLWLKQQSKLAKRWLAIAVGLGVLSSLFLVAQAALLASILHQLIIEQVDKHLLIP 64
           +Q S+ ++L+    +   W A A+ + +   LF  +Q  L   + H L   Q        
Sbjct: 6   QQSSMTIYLRLLKYVLPYWGAFAISI-IGFVLFASSQPMLADMLKHFLDALQKPNDT--- 61

Query: 65  HFFGLAALIAVRALC-------SWGREIAGFRCGEEIRRYIRQL---ILDKLRDLGPAYI 114
            F G++ ++ V  L          G  +  +   +  R  +  L   + D L  L   Y 
Sbjct: 62  QFMGVSLVLGVPLLIVLIAVYQGIGSFLGNYYLAKVARGVVHDLRCALFDNLLTLPNRYF 121

Query: 115 KGKPAGSWAALMLEQVENMHDFFARYLPQMSLSVLVPFVILAVVFPVNWAAGLIFLLTAP 174
               +G   + +   V  +       +  +    L    +   +   NW   L+ L   P
Sbjct: 122 DNHNSGHLISRITYNVTMVTGAATDAIKVVIREGLTVVFLFGYLLYSNWKMTLVLLAILP 181

Query: 175 LVPLFMALVGIKAADASRKNFKALQRLSGHFYDRLQALTTIRLFDRTTAETEHMRGASEV 234
           ++ + ++    K    S+K   A+  ++    + +Q    +R F   + E E    AS  
Sbjct: 182 VIAILVSSASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGESYEIERFHKASAD 241

Query: 235 FRHRTMDVLRIAFLSSAVLEFFTSISIALTAVYFGFSYIGELNFGYYGASVTLFAGLFVL 294
             +R++ + R   + + +L+    I +A+  +Y      G+ + G   A +T  AGL   
Sbjct: 242 NMNRSLGMTRTQSIYTPMLQLVIYIGMAVL-MYLVLYLRGDASAGELVAYITA-AGLLP- 298

Query: 295 ILAPEFYQPLRDLGTYYHAKQLAVGAAESIVDFLQTEVDTLHSGERHLSDNDDIEIIAND 354
                  +P+R L       Q  + AA+SI + L  E +     +     N  +E+   +
Sbjct: 299 -------KPIRQLSEVSATIQKGLAAADSIFEQLDEEPEVDTGTKEMARVNGRLEV--RN 349

Query: 355 LVVLSPQGKRLA-GPLSFTLQSGKTTALVGPSGAGKTSLINTILGFMPY-QGSLTINGIE 412
           L    P  +++    +SFT + G+  ALVG SG+GK++L N I  F  + QG + ++G++
Sbjct: 350 LSFQYPGTEKIVLDDISFTAEEGQMIALVGRSGSGKSTLANLIPRFYHHDQGQILLDGVD 409

Query: 413 LRELDHAQWRQTISWVGQNPLLLYGTIRDNVTLGKHNIAD---EQVTQTLQAAYAQEFVE 469
           + +      R+ I+ V Q   L   ++ +N+  G  ++AD   E V +  + AYA EF+E
Sbjct: 410 VEQYKLTNLRRHIALVTQQVTLFNDSVTNNIAYG--DLADAPFESVRKAAEDAYAAEFIE 467

Query: 470 Q--QGLDYPISDRSAGLSVGQAQRLALARAILQNGRFWLLDEPTASLDARSEQYVMRGLT 527
           Q  QG D  + +    LS GQ QRLA+ARA+L+N    +LDE T++LD  SE+++   L 
Sbjct: 468 QMPQGYDTLVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALD 527

Query: 528 ESIQQRTALFVTHQLQPLQSVEQILVMENGLLVQAGHFEDLSQQSGLFATM 578
           + I+ RT L + H+L  ++  + IL+M+ G +V+ G   +L   +G +A +
Sbjct: 528 QVIKGRTTLVIAHRLSTIEKADLILLMDKGRIVERGTHAELLALNGFYARL 578