Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  153 bits (387), Expect = 2e-41
 Identities = 116/460 (25%), Positives = 220/460 (47%), Gaps = 53/460 (11%)

Query: 148 VLVPFVILAVVFPVNWAAGLIFLLTAPLVPLFMALVGI------KAADASRKNFKALQRL 201
           +LV F+ + V+      A     L  P++   M  VG+      K    S +   A   +
Sbjct: 166 ILVYFLSMLVII-----ADADLRLMLPMLVWLMIYVGLQFYYLPKLKQVSTEQADARSTM 220

Query: 202 SGHFYDRLQALTTIRLFDRTTAETEHMRGASEVFR---HRTMDVLRIAFLSSAVLEFFTS 258
           +G   D    + T++LF  T  E ++ + +   F    +R M ++    +S  V+ +  +
Sbjct: 221 TGRIVDSYTNIATVKLFSHTQKEAQYAKESMTGFLDTVYRQMRLVTGINVSVQVINYLLA 280

Query: 259 ISIALTAVYFGFSYIGELNFGYYGASVTLFAGLFVLILAPEFYQPLRDLGTYYHAKQLAV 318
            S+A  +++        +  G    +V+L   L  +                    Q  +
Sbjct: 281 FSVAAVSIWLWRD--NAITIGAIAVAVSLSLRLNGM-------------------SQWIM 319

Query: 319 GAAESIVDFLQTEVDTLHSGERHLS--DNDDI--------EIIANDLVVLSPQGKRLAGP 368
               S+ + + T  D +++  R  S  D+D+         EI  N +     +   +   
Sbjct: 320 WEISSLFENIGTVADGMNTLSRPTSVQDSDNASQLTVSKGEIAFNRVSFHYGEASGVIED 379

Query: 369 LSFTLQSGKTTALVGPSGAGKTSLINTILGFMPY-QGSLTINGIELRELDHAQWRQTISW 427
           L   ++ G+   LVG SGAGK++L+N ++ F    QGS+TI+G  +RE++    R  I  
Sbjct: 380 LDLKIKPGEKVGLVGRSGAGKSTLVNLLMRFHDVEQGSITIDGQNIREVEQDSLRANIGM 439

Query: 428 VGQNPLLLYGTIRDNVTLGKHNIADEQVTQTLQAAYAQEFVE-------QQGLDYPISDR 480
           V Q+  LL+ +IRDN+  GK + ++E++   ++ A A EF++         GLD  + +R
Sbjct: 440 VTQDTSLLHRSIRDNIRYGKPDASEEELENAIRQAQAYEFIQGLSDPEGNHGLDAQVGER 499

Query: 481 SAGLSVGQAQRLALARAILQNGRFWLLDEPTASLDARSEQYVMRGLTESIQQRTALFVTH 540
              LS GQ QR+A+AR +L+N    LLDE T++LD+  E  +   L + ++ +T + + H
Sbjct: 500 GVKLSGGQRQRIAIARVLLKNAPILLLDEATSALDSEIEAAIQESLYQLMEGKTVIAIAH 559

Query: 541 QLQPLQSVEQILVMENGLLVQAGHFEDLSQQSGLFATMLA 580
           +L  + ++++++V++ G +V+ G  ++L +Q G++A + A
Sbjct: 560 RLSTIAAMDRLIVLDQGKIVEQGTHQELIKQGGIYAQLWA 599