Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., toxin secretion ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  143 bits (361), Expect = 2e-38
 Identities = 113/388 (29%), Positives = 191/388 (49%), Gaps = 24/388 (6%)

Query: 185 IKAADASRKNFKALQRLSGHFYDRLQALTTIRLFDRTTAETEHMRGASEVFRHRTMDVLR 244
           +KAA      F +L+   GH  + L AL +I+      AE    +   ++  H     L+
Sbjct: 333 LKAAIEEGNKFSSLKH--GHLIESLSALESIKA---NGAEGIVQKSWQQMIGHSANWQLK 387

Query: 245 IAFLSSAVLEFFTSISIALTAVYF-GFSYIGELNFGYYGASVTLFAG---LFVLILAPEF 300
              LS+         S++ TA +   F+ +  +  G Y  S  L +    +  ++L+   
Sbjct: 388 SKKLSN---------SVSNTANFIVQFTVVCVVILGVYRVSDNLISMGGIIAAVMLSSRA 438

Query: 301 YQPLRDLGTYYHAKQLAVGAAESIVDFLQTEVDTLHSGERHLSDNDDIEIIANDLVVLSP 360
             P+  L            A   + + +  E +  + G   +S    I  I  D V  S 
Sbjct: 439 IAPMAQLAGLMTRANHTASALRQLNELMLQEDEFENKGHL-VSKQRLIGKINADHVGFSY 497

Query: 361 QG--KRLAGPLSFTLQSGKTTALVGPSGAGKTSLINTILG-FMPYQGSLTINGIELRELD 417
            G  K +  PLS T+  G+  A++G +G+GK++L   ++G F P  GSL  +G++  ++ 
Sbjct: 498 PGSEKPVLHPLSLTINPGERIAIIGRNGSGKSTLAKLLVGLFQPTTGSLRYDGVDSAQIH 557

Query: 418 HAQWRQTISWVGQNPLLLYGTIRDNVTLGKHNIADEQVTQTLQAAYAQEF--VEQQGLDY 475
            +  R+   ++ Q+  L +GTIRDN+  G   + + Q+ + +Q +   +F  +E +GLD 
Sbjct: 558 PSDLRRNFGYLPQDVTLFHGTIRDNILFGTRQVTEHQLIRAVQLSGVSQFTHLEAEGLDQ 617

Query: 476 PISDRSAGLSVGQAQRLALARAILQNGRFWLLDEPTASLDARSEQYVMRGLTESIQQRTA 535
            + +    LS GQ Q +ALARA L +    L+DEPTASLDAR+EQ  +R +    + RT 
Sbjct: 618 QVGEGGMSLSRGQRQTVALARATLNDPPVLLMDEPTASLDARAEQQFIRSMQNVSKDRTL 677

Query: 536 LFVTHQLQPLQSVEQILVMENGLLVQAG 563
           L +TH++  LQ V++I+V+E G +V  G
Sbjct: 678 LLITHKMHLLQLVDRIIVLERGHVVADG 705