Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., ABC transporter, ATP-binding protein CydD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  588 bits (1517), Expect = e-172
 Identities = 315/614 (51%), Positives = 421/614 (68%), Gaps = 36/614 (5%)

Query: 1   MDKKKQRSLNLWLKQQSKLAKRWLAIAVGLGVLSSLFLVAQAALLASILHQLII------ 54
           MDK  ++SL +WLK Q K    +L ++V  G+LS++ L+ QA L+A++L  +II      
Sbjct: 1   MDKSLEKSLLVWLKSQKKACGWFLKLSVWCGILSAIALIVQAYLIATLLDGVIIGNGLLG 60

Query: 55  -------EQVDKHLLIPHFFGLAALIAVRALCSWGREIAGFRCGEEIRRYIRQLILDKLR 107
                    +     +PH   L  L+ +RA  ++ RE   F  G  +R++IR  ++DKL 
Sbjct: 61  FGADSAQSTIGASDYLPHLMALIGLMLLRAGLAYARERTSFEAGRRLRQHIRSAVMDKLT 120

Query: 108 DLGPAYIKGKPAGSWAALMLEQVENMHDFFARYLPQMSLSVLVPFVILAVVFPVNWAAGL 167
            LGPA+IKGKPAGSWA+++LEQVE++ DF+ARYLPQM+L+ ++P +IL  VFP+NWAAGL
Sbjct: 121 RLGPAFIKGKPAGSWASIVLEQVEDLQDFYARYLPQMTLAGVIPLLILIAVFPINWAAGL 180

Query: 168 IFLLTAPLVPLFMALVGIKAADASRKNFKALQRLSGHFYDRLQALTTIRLFDRTTAETEH 227
           I LLTAPL+PLFM LVG+ AADA+RKNF AL RLSG F DRL+ L T++LF+R  AE + 
Sbjct: 181 ILLLTAPLIPLFMILVGMGAADANRKNFNALARLSGRFMDRLKGLATLKLFNRGDAELKV 240

Query: 228 MRGASEVFRHRTMDVLRIAFLSSAVLEFFTSISIALTAVYFGFSYIGELNFGYYGASV-- 285
           +  ASE FR RTM VLR+AFLSSAVLEFF ++SIA+ AVYFGFSY+G L+FGYYG     
Sbjct: 241 IEKASEEFRSRTMSVLRMAFLSSAVLEFFAAVSIAVLAVYFGFSYLGHLDFGYYGMHAHV 300

Query: 286 ----------TLFAGLFVLILAPEFYQPLRDLGTYYHAKQLAVGAAESIVDFLQ----TE 331
                     +LF GLF+LILAPEFYQPLRD+GT+YHAK  A+GAA++++  L+      
Sbjct: 301 GPNANEGLPFSLFVGLFILILAPEFYQPLRDMGTHYHAKAQAIGAAQALMTLLEHPDPQP 360

Query: 332 VDTLHSGERHLSDNDDIE-IIANDLVVLSPQGKRLAGPLSFTLQSGKTTALVGPSGAGKT 390
            D++ S  R     D IE ++A +L V S  G RL GP+SF L+ G+  ALVGPSGAGKT
Sbjct: 361 TDSVASDTR----LDKIESMLAQELEVFSVDGSRLLGPISFELKQGEHLALVGPSGAGKT 416

Query: 391 SLINTILGFMPYQGSLTINGIELRELDHAQWRQTISWVGQNPLLLYGTIRDNVTLGKHNI 450
           SL+N +LGF+PYQG L ING+EL  +D A WR+ ++W+GQ P L +GT+R+NV L   NI
Sbjct: 417 SLLNALLGFLPYQGKLLINGVELSSIDLAHWRRQLAWLGQEPQLFHGTVRENVALANPNI 476

Query: 451 ADEQVTQTLQAAYAQEFVEQQ--GLDYPISDRSAGLSVGQAQRLALARAILQNGRFWLLD 508
            DEQV   L+ A   EFV  Q  GL   I ++S+ LSVGQAQR+ALARA+ Q  + ++LD
Sbjct: 477 TDEQVWHLLEQANIHEFVRTQPLGLATAIGEQSSTLSVGQAQRIALARALAQASQVFILD 536

Query: 509 EPTASLDARSEQYVMRGLTESIQQRTALFVTHQLQPLQSVEQILVMENGLLVQAGHFEDL 568
           EP+ASLD+ SEQ +   L  ++  +  + VTH+L  L  ++ ILV++ GL+VQ G F  L
Sbjct: 537 EPSASLDSVSEQLLTLTLNRAMAGKMCIMVTHRLDQLDRMQSILVLDKGLIVQRGDFATL 596

Query: 569 SQQSGLFATMLAAN 582
           S Q+GLF TML  N
Sbjct: 597 SVQAGLFQTMLHEN 610