Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  145 bits (367), Expect = 4e-39
 Identities = 153/573 (26%), Positives = 264/573 (46%), Gaps = 39/573 (6%)

Query: 24  LAIAVGLGVLSSLFLVAQAALLASILHQLIIEQVDKHLLIPHFFGLA-ALIAVRALCSWG 82
           +A+A+   +++ L  V    +L  ++  L   +  + L +P   GL  A  AVR L    
Sbjct: 33  VALAMSCLIVAKLASVGLPFILKDVVDTLDANKTAQTLSVP--IGLVLAYGAVRLLTVIT 90

Query: 83  REIAGFRCGEEIRRYIRQL---ILDKLRDLGPAYIKGKPAGSWAALMLEQVENMHDFFAR 139
            EI     G    R IR+L   + D L  L   +   +  G  +   +E+  +   F  R
Sbjct: 91  GEIRDTLFGRVTERAIRRLGLAVFDHLHRLDLDFHLERRTGGLSR-DIERGTSGVSFLMR 149

Query: 140 YLPQMSLSVLVPFVILAVVFPVNWAAGLIFL-LTAPLVPLFMALVGIK-AADASRKNFKA 197
           ++    +  L+   ++  +F  N+      +   + L  ++ +++  +   +  R   KA
Sbjct: 150 FMVFNIVPTLLEIAMVIGIFFFNYGVAFASITFISVLAYIWFSVIATEWRTEYVRDAAKA 209

Query: 198 LQRLSGHFYDRLQALTTIRLFDRTTAETEHMRGAS---EVFRHRTMDVLRIAFLSSAVLE 254
               +    D L    T++ F+    E+E    A    EV + +    L       A++ 
Sbjct: 210 DSLSNTRAIDSLLNYETVKYFNNEKYESERYDQALDQWEVAKRKNRLSLFALNGGQALI- 268

Query: 255 FFTSISIALTAVYFGFSYIGELNFGYYGASVTLFAGLFVLILA--PEFYQPLRDLGTYYH 312
               I+IA+TA+    +Y    N       +TL  G FVLI A   + + PL  LG  Y 
Sbjct: 269 ----IAIAMTAMMALAAYKVTHN------EMTL--GDFVLINAFMMQLFMPLNFLGFVYR 316

Query: 313 AKQLAVGAAESIVDFLQTEVDTLHSGERHLSDNDDIEIIANDL----VVLSPQGKRLAGP 368
             + A+   E +   L       H       D  D E    +L    V  S   + +   
Sbjct: 317 EIRGALANIERMFSLLDK-----HPSIVDKPDALDFEPKRGELSFENVSFSYDDRPILRN 371

Query: 369 LSFTLQSGKTTALVGPSGAGKTSLINTILGFMPY-QGSLTINGIELRELDHAQWRQTISW 427
           +SF + +GK  A+VG SGAGK++LI  +  F    QG + I+G ++R+L     R+ I+ 
Sbjct: 372 VSFKVAAGKKVAVVGDSGAGKSTLIKLLFRFYDVEQGRILIDGQDIRQLTQDALRRAIAI 431

Query: 428 VGQNPLLLYGTIRDNVTLGKHNIADEQVTQTLQAAYAQEFVEQ--QGLDYPISDRSAGLS 485
           V Q+ +L   ++ +N+  G+ N +D+ V   ++ A+ ++F+    QG D  + +R   LS
Sbjct: 432 VPQDTVLFNDSLVENIRYGRPNASDDDVRHAIKLAHLEDFIASLSQGWDTKVGERGLKLS 491

Query: 486 VGQAQRLALARAILQNGRFWLLDEPTASLDARSEQYVMRGLTESIQQRTALFVTHQLQPL 545
            G+ QR+A+ARAIL+     + DE T+SLD+RSEQ ++  L E  +  T+L V H+L  +
Sbjct: 492 GGEKQRVAIARAILKGSPVLVFDEATSSLDSRSEQAILSALREVAKGHTSLVVAHRLSTI 551

Query: 546 QSVEQILVMENGLLVQAGHFEDLSQQSGLFATM 578
              +QI+V+  G +V+ G+   L  Q GL+A +
Sbjct: 552 VDADQIVVLSKGEIVEQGNHSSLLAQDGLYAKL 584