Pairwise Alignments

Query, 595 a.a., thiol reductant ABC exporter subunit CydD from Vibrio cholerae E7946 ATCC 55056

Subject, 600 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella sp. ANA-3

 Score =  149 bits (375), Expect = 4e-40
 Identities = 122/492 (24%), Positives = 223/492 (45%), Gaps = 26/492 (5%)

Query: 98  IRQLILDKLRDLGPAYIKGKPAGSWAALMLEQVENMHDFFARYLPQMSLSVLVPFVILAV 157
           +RQ + +    L  +Y+  +  G+  + +    E +       L  +    +    +LA+
Sbjct: 117 MRQQVFEHYLSLPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDGVTVIGMLAL 176

Query: 158 VFPVNWAAGLIFLLTAPLVPLFMALVGIKAADASRKNFKALQRLSGHFYDRLQALTTIRL 217
           +F  +W   L  L+  P++ L + +V  +    S++   A+  +S      ++    +  
Sbjct: 177 MFYNSWKLSLCILVIGPIMGLVITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLA 236

Query: 218 FDRTTAETEHMRGASEVFRHRTMDVLRIAFLSSAVLEFFTSISIALTAVYFGFSYIGELN 277
           F     ET      ++  RH+ M +     +S  ++    S ++A         Y   L+
Sbjct: 237 FGGQETETARFAKVNDRNRHQNMKLAVAQAISQPLIMVIGSFALAFVL------YAASLD 290

Query: 278 FGYYGASVTLFAGLFVLILAP--EFYQPLRDLGTYYHAKQLAVGAAESIVDFLQT--EVD 333
                    L AG F  IL       QP+++L       Q  + A  ++ + L T  E D
Sbjct: 291 ----SMKADLTAGTFATILGAMMAMLQPIKNLTRVNAEFQRGIAACTTVFELLDTLPESD 346

Query: 334 TLHSGERHLSDNDDIEIIANDLVVLSPQG--KRLAGPLSFTLQSGKTTALVGPSGAGKTS 391
           T     +    N     +  D V  S  G  +R    + F +  G+T ALVG SG+GK++
Sbjct: 347 TGTYTVKRAKGN-----LRFDNVSFSYDGQERRALDNIDFEVTQGQTLALVGRSGSGKST 401

Query: 392 LINTILGFMP--YQGSLTINGIELRELDHAQWRQTISWVGQNPLLLYGTIRDNVTLGKHN 449
           + + +  F      G + ++ + + +      R  ++ V Q   L   TI +N+      
Sbjct: 402 IASLVTRFYTGLESGDILLDDVSIYDYSLKSLRNQVALVSQQVTLFNDTIANNIAYAYPG 461

Query: 450 IAD-EQVTQTLQAAYAQEFVEQ--QGLDYPISDRSAGLSVGQAQRLALARAILQNGRFWL 506
            A  EQ+ Q    A+A EF+EQ  +GLD  + +    LS GQ QR+A+ARA+L++    +
Sbjct: 462 EATREQIIQAATLAHAMEFIEQLPEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLI 521

Query: 507 LDEPTASLDARSEQYVMRGLTESIQQRTALFVTHQLQPLQSVEQILVMENGLLVQAGHFE 566
           LDE T++LD  SE+ + +GL    Q RT++ + H+L  ++S +QILV++ G +V+ G  +
Sbjct: 522 LDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHK 581

Query: 567 DLSQQSGLFATM 578
            L +  G++A +
Sbjct: 582 SLLELGGMYAKL 593