Pairwise Alignments

Query, 573 a.a., cysteine/glutathione ABC transporter ATP-binding protein/permease CydC from Vibrio cholerae E7946 ATCC 55056

Subject, 1000 a.a., cyclic nucleotide-binding domain (cNMP-BD) protein from Synechococcus elongatus PCC 7942

 Score =  178 bits (451), Expect = 1e-48
 Identities = 129/417 (30%), Positives = 205/417 (49%), Gaps = 13/417 (3%)

Query: 157 AWFDPQLGMTLGAILLLVLLVWPTLFYR-LGKKNGQHLTQNKAELRVRTLDWLQGYSELT 215
           +WF     +TL A+  + + V  T F   + ++  +   +  AE + + ++ L G   + 
Sbjct: 579 SWF-----LTLVALSTVPIFVAITFFASPVVRRQLREKAERNAETQSQLVEVLSGIQTVK 633

Query: 216 IFGAEQTYRQAILTAQDKLLRNQYVNAQVSGLAQSLLLLANGWTLVLMIWLAADGVGGQT 275
               E   R        + +   + N   S  A SL    N  + +L++W+    V    
Sbjct: 634 AQNIELKARWQWQERYARYIAAGFRNINTSTAASSLTNFFNQLSGLLVLWVGVYLVFDNQ 693

Query: 276 PDPLIALVAFATMAS--VELLMPIAGAFQHLGQTLTSARRLNEIILAKPEVEFTAQPTAH 333
              L  L+AF  ++    + L+ +A  +Q+  +T  S  RL +I+    E +   Q    
Sbjct: 694 LS-LGQLIAFRIISGYVTQPLLRLAQLWQNFQETALSLERLADIVDTPQESDDDDQGKIP 752

Query: 334 NGQYN--IEFNGVHFAYQANKPKAIDDFTLTLAQGQKVAIVGQTGSGKSTLIQLLCRYWD 391
               N  +EF  + F +    P  + + TL +  G+ V IVGQ+GSGKSTL++LL R + 
Sbjct: 753 MPMINGKVEFRNLSFRFGEQGPLQLSNVTLEIPAGEYVGIVGQSGSGKSTLMKLLPRLYS 812

Query: 392 VQQGQITIGGTDIREWRESDLRAAISVVSQRVDILNGTLRDNLKLAKPDATDEALSDILQ 451
             +G+I I G DI +     LR  I +V Q   +  GT+ +N+ L KP+AT + +    +
Sbjct: 813 PLEGEILIDGYDISKVELYSLRRQIGIVPQDSLLFQGTVEENISLTKPNATTDEIITAAK 872

Query: 452 QVGLEKLLQDAAL--NTWLGEGGRQLSGGEKRRLGIARALLHNAPILLLDEPTEGLDKQT 509
             G    +    L  NT +GE G  LSGG+++R+ IAR +L N  +L+LDE T  LD  T
Sbjct: 873 AAGAHDFIMTLPLGYNTRVGERGGALSGGQRQRIAIARTVLQNPQLLILDEATSALDYDT 932

Query: 510 EQQIMQLLHCHFGHKTVLFITHRLVNLEQMDAIALIEQGQLVEYGHHHTLLAQHGRY 566
           E+Q+   L  HF  KTV FITHRL  +   D I ++++G +VE G H  L+   GRY
Sbjct: 933 ERQVSINLQQHFRGKTVFFITHRLSTVRHADRIIVMDKGAMVEQGSHDELMELRGRY 989