Pairwise Alignments

Query, 573 a.a., cysteine/glutathione ABC transporter ATP-binding protein/permease CydC from Vibrio cholerae E7946 ATCC 55056

Subject, 600 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella sp. ANA-3

 Score =  190 bits (483), Expect = 1e-52
 Identities = 134/492 (27%), Positives = 247/492 (50%), Gaps = 19/492 (3%)

Query: 91  KLLTDLRVFFFEKLTPLIPGRLSAVRDADMLNRIVADVDAMDHVY-LRLINPVTVGV--L 147
           +L+ D+R   FE    L    +      ++++++  D + +       LI+ V  GV  +
Sbjct: 112 RLIMDMRQQVFEHYLSLPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDGVTVI 171

Query: 148 GIAALTTLIAWFDPQLGMTLGAILLLVLLVWPTLFYRLGKKNGQHLTQNKAELRVRTLDW 207
           G+ AL    +W      + +G I+ LV+    T+  R  +K  + +     ++   T   
Sbjct: 172 GMLALMFYNSWKLSLCILVIGPIMGLVI----TIVSRRFRKVSKQIQTAMGDVSAATEQM 227

Query: 208 LQGYSELTIFGAEQTYRQAILTAQDKLLRNQYVNAQVSGLAQSLLLLANGWTLVLMIWLA 267
           ++G+  +  FG ++T         D+        A    ++Q L+++   + L  +++ A
Sbjct: 228 IKGHKNVLAFGGQETETARFAKVNDRNRHQNMKLAVAQAISQPLIMVIGSFALAFVLYAA 287

Query: 268 A-DGVGGQTPDPLIALVAFATMASVELLMPIAGAFQHLGQTLTSARRLNEIILAKPEVEF 326
           + D +         A +  A MA ++ +  +        + + +   + E++   PE + 
Sbjct: 288 SLDSMKADLTAGTFATILGAMMAMLQPIKNLTRVNAEFQRGIAACTTVFELLDTLPESD- 346

Query: 327 TAQPTAHNGQYNIEFNGVHFAYQANKPKAIDDFTLTLAQGQKVAIVGQTGSGKSTLIQLL 386
           T   T    + N+ F+ V F+Y   + +A+D+    + QGQ +A+VG++GSGKST+  L+
Sbjct: 347 TGTYTVKRAKGNLRFDNVSFSYDGQERRALDNIDFEVTQGQTLALVGRSGSGKSTIASLV 406

Query: 387 CRYWD-VQQGQITIGGTDIREWRESDLRAAISVVSQRVDILNGTLRDNLKLAKP-DATDE 444
            R++  ++ G I +    I ++    LR  +++VSQ+V + N T+ +N+  A P +AT E
Sbjct: 407 TRFYTGLESGDILLDDVSIYDYSLKSLRNQVALVSQQVTLFNDTIANNIAYAYPGEATRE 466

Query: 445 ALSDILQQVGLEKLLQ-----DAALNTWLGEGGRQLSGGEKRRLGIARALLHNAPILLLD 499
               I+Q   L   ++        L+T +GE G  LSGG+++R+ IARA+L +AP+L+LD
Sbjct: 467 ---QIIQAATLAHAMEFIEQLPEGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILD 523

Query: 500 EPTEGLDKQTEQQIMQLLHCHFGHKTVLFITHRLVNLEQMDAIALIEQGQLVEYGHHHTL 559
           E T  LD ++E+ I Q L     ++T + I HRL  +E  D I +++QG++VE G H +L
Sbjct: 524 EATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSL 583

Query: 560 LAQHGRYHKLTQ 571
           L   G Y KL Q
Sbjct: 584 LELGGMYAKLYQ 595