Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., pseudouridine synthase from Pseudomonas stutzeri RCH2

 Score =  295 bits (756), Expect = 9e-85
 Identities = 159/323 (49%), Positives = 211/323 (65%), Gaps = 21/323 (6%)

Query: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQE 62
           EKLQKVLAR G  SRR++E  I  GRV VNG VA LG+R++  +A+  +DG ++  +   
Sbjct: 15  EKLQKVLARLGMASRRDVEKWIVEGRVKVNGAVASLGQRVDSHDAIA-VDGRLLKREEAN 73

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122
           EV+ RVL Y KP+GE+CTR+DPEGR TVFDRLP+ +  RWI++GRLD NT+GLLLFTTDG
Sbjct: 74  EVVRRVLIYNKPDGEICTRNDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGLLLFTTDG 133

Query: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYA-GGEGINH 181
           ELANRLMHPS +++REY VRV G+V +E +  L  GV LEDG ARF D+  A GGEG NH
Sbjct: 134 ELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKTGVMLEDGPARFTDIQEAPGGEGFNH 193

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLRE 241
            ++ V+ EGRNREVRRLWESQG  VSRLKRVR+G +F+   LP G W E+   +V+ L +
Sbjct: 194 WYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFMTSDLPMGRWREMSQSEVDILSQ 253

Query: 242 LVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAPARRKPGG 301
            V L+P         P    + +E+         + R + +++   GR  + P   +   
Sbjct: 254 EVGLKPV------ALPSMKAKAKEK---------IDRMQRKVAKPLGRGERRPRVLRSST 298

Query: 302 ES----STRNKVANQQQSSRKPR 320
           E+    S + +V    Q+ RKPR
Sbjct: 299 EADVAGSDKPRVQRDDQAGRKPR 321