Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 237 a.a., Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) from Xanthomonas campestris pv. campestris strain 8004

 Score = 89.7 bits (221), Expect = 6e-23
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 17/233 (7%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVS-VNGKVAVLGERLEDDNAVVRIDGHVVSVKAQE 62
           KL K +A  G+GSR+++  L R G ++   G+V    +++  D+A +RIDG  +      
Sbjct: 2   KLVKHIANLGYGSRKQVTQLFRQGAITDAAGEVLYADDQV--DHAAIRIDGEPLDPPPGF 59

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLP---KIRGSRWISVGRLDANTSGLLLFT 119
            V+      +KP G  C+  D    R +++ LP   ++R      VGRLD  TSG+LL T
Sbjct: 60  SVLL-----HKPSGYTCSTKDTG--RLIYELLPPRFRLRAPVLAPVGRLDRETSGMLLMT 112

Query: 120 TDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGI 179
            DG L +R++ P   +++ Y V +  D+  ++      G  L +G  +   ++ A  E +
Sbjct: 113 DDGALLHRIISPKSALDKVYDVTLAEDLRGDEAALFASGTLLLEGETK--PLLPAELEVL 170

Query: 180 N-HTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMEL 231
                 + ++EGR  +VRR++ + G  V  L R R G + LD  L  G W  L
Sbjct: 171 GARQARLTLHEGRYHQVRRMFAAAGNHVVALHRSRIGGLSLD-GLDAGHWRPL 222